EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-10128

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr17:56949240-56950550

Target genes

Number: 18
Name	Ensembl ID

Ptprs	ENSMUSG00000013236
Safb2	ENSMUSG00000042625
Safb	ENSMUSG00000071054
Rpl36	ENSMUSG00000057863
Lonp1	ENSMUSG00000041168
Ranbp3	ENSMUSG00000002372
Vmac	ENSMUSG00000054723
Ndufa11	ENSMUSG00000002379
Nrtn	ENSMUSG00000039481
Dus3l	ENSMUSG00000007603
Rfx2	ENSMUSG00000024206
Mllt1	ENSMUSG00000024212
Clpp	ENSMUSG00000002660
Alkbh7	ENSMUSG00000002661
Gtf2f1	ENSMUSG00000002658
Khsrp	ENSMUSG00000007670
Slc25a23	ENSMUSG00000046329
Tubb4a	ENSMUSG00000062591

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ESRRB	MA0141.3	chr17:56949707-56949718	TTTGACCTTGA	-	6.14
Esrra	MA0592.2	chr17:56949708-56949719	TTGACCTTGAA	-	6.14
Nr5a2	MA0505.1	chr17:56949707-56949722	TTTGACCTTGAACTT	-	6.79

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_02869

chr17:56950009-56962874

HFSCs

Enhancer Sequence

GGTTGTCATT CAATAAGGGA AGGCCACAGA TGTCAAACTG AGGTTGATAA GCTACAGTTA 60
GGTGTGTCGA ATGTGTGTGT ACGTATATGT GCATGCATTT GCTGCATGGG TGAATGTGTG 120
TGTGTGTGCT TGTGCATTCT GGTGTGTACT GGCTGGAAGG ACTGCAATAG CAATGGTGTG 180
GCTGAGCTTG CTGGGCACGG GAGTCTTGCT CACTGGCCCT CTGCTTCTCT GCTTGGTTCT 240
TTGCCTCTCC TGAGTTCTCT CCTGGGGGGA CCTGGCTTTC TCTACCTGTC CTCACCTGAT 300
TTCCTCCCCT ATGGGGGTCT CAGGAACCTG AGAGCACTCT GTCATCCTGC CTCTCTGAGC 360
CTGGCTCATG GTTCCCTGGT GACCCAGCTC TACCACATAC TGCCAGTCAA TGGTCCAAAA 420
GAAGGCCTCA AGTCTCCCCA AGACCAGCCT CTAATCCAGT CTGTGCATTT GACCTTGAAC 480
TTGACAGAGT GCCCAAGTGG AGTTGCTGGA TGGCAGATTG CAGTGGCCAG TCTCCTGCTG 540
TCTCCAAGGA CTCCAAGAGG CAGGCACAGG CTGCAGTGCG CTGGGGTCTG GCCTGGCGCC 600
AGGTGGATCT GCTGGGGAAG CGCCCTTTGT TTACAGGGGG AAAAAAAAAT CTTGGGTTGC 660
CTAGCAACAA GTGGGCAGGC AAGGAAGGGC AGGGAGGCTG TGAGCCATTT CTGGGCTGGG 720
TTCCTGGCTG TCCTGACTCA CTGTGACCTT AAGCAATTTC TCTCTCTTTT ATCCCCACCC 780
CTCTATCCAC CCATCCAGGG GTGCTGTGAC TCTGTCACTT GCCACTTGGT TAAGCTCTGC 840
TGTGGGGGAA TCAAGCCTCA GTTGGTCTTT GTTAGTCTTG GTGGCAAGAC TGGCACCTGA 900
GTCCTACCCA CCAATGCAAT TTGTATCCCT GCTCTGAGTA GGGGGACAGG TCCAGCCAGA 960
TGGGCCCACA CTCCAGCTCC CCTACAGACA AGTTCTCTTG GTTCCCTGTG ACCTGAGGTC 1020
TCAGGAGTAA GTGGCCTGTG TGTGACACTG GGCATTGGTG ACCTGTGCTG GGGGCTGCCC 1080
TGCTTAGCAT GGACCTGAAG GTGATGCTGG CAACTGTAGC GGCTGGCCAT GGTGGCTGCA 1140
TCTTGTCTCC CTCCCCACTG TGGAACTGAG TTCTTCTCTT CCATGCCCCT GAACTGCCTG 1200
CCTCTTGGTA TTCATCAGGG TTGAGAGAGC TGAGCACTGT TCATGCCAGT CACACTGTGT 1260
GACAGTCACC CATGTCCCCA GGAAGGGTCA GGGTCCCCAG GGATACCAAG 1310