EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-10009

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr17:47288010-47289350

Target genes

Number: 19
Name	Ensembl ID

BC048355	ENSMUSG00000040658
Rrp36	ENSMUSG00000023971
Klhdc3	ENSMUSG00000063576
Mea1	ENSMUSG00000002768
Ppp2r5d	ENSMUSG00000059409
Cnpy3	ENSMUSG00000023973
Rpl7l1	ENSMUSG00000063888
BC032203	ENSMUSG00000036568
A330017A19Rik	ENSMUSG00000073388
Tbcc	ENSMUSG00000036430
7SK	ENSMUSG00000084572
Ubr2	ENSMUSG00000023977
Trerf1	ENSMUSG00000064043
Mrps10	ENSMUSG00000034729
AI661453	ENSMUSG00000034382
Ccnd3	ENSMUSG00000034165
Bysl	ENSMUSG00000023988
Med20	ENSMUSG00000092558
Mdfi	ENSMUSG00000032717

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Gfi1b	MA0483.1	chr17:47288865-47288876	AGCTGTGATTT	-	6.14
ZNF263	MA0528.1	chr17:47288722-47288743	TCACCCGCCCCCTCCTCCTTC	-	7.24
ZNF263	MA0528.1	chr17:47288719-47288740	TCTTCACCCGCCCCCTCCTCC	-	7.28
ZNF740	MA0753.2	chr17:47288893-47288906	CCCCCCCCCCCAC	+	6.92
ZNF740	MA0753.2	chr17:47289258-47289271	GCGCCCCCCCCAC	+	6.98

Enhancer Sequence

CTCTCAGCTG GCTTCCCTGT GCTTTTTTTA GCTGGGTGAG TATGTGGTTG TCAGAGTTTG 60
AACCGTGAAG ACCCCAGGAC GCCCGTCCTT CCTTTTGAAT AGCTTTTAAC TCATTACAAG 120
CCACTCTGGG ATCTGATGAT ATGTCTCATA AATGCCCATT CCTTAGGTAT CTGGGTGTCT 180
GTGTGTGCTT TGCCTGGTCT TAGGGAGGGA CTGTTGGGGC GTACAGGCCA TGGTCCTGGG 240
ACCCCTGCTG CCCTCGGTGT GCAGAATCAC TGTGTATGAG TTTATCTTCT CTGGACTGGG 300
AGTTTGGGGA GGGCAGAACT GGGTCACCTC TCCGCTCTGC ATCCCAGCTT CTTGCACACA 360
GCCAGCCACT GGTTGGTACT GTAGACACGC TTATGTAAGA ATCAGATTTT TTTTTCCGTT 420
TAAAAAAAAT TTTTTTTTTA ATCTCTGGTT TTTCTTCCCA TTGGTTCTTG ATGTGGGGAG 480
AAAGCCAGGC CCAGTGTCTT GAGCCTGTGA GGGAGACCAG AGCAGGGTTC TTTTCCTTGC 540
TATTCTATGG CCTTGCAGCA TGGCTTAACT AGAGCCCTTG AATGCAAATC CCGTCCCTTC 600
CCCCACCCCT TTTGATAAGT GACATTTTGT TAAATCAGTT ATTCAAGGCC TTATCTATAT 660
TTCTGTCTGT GCTGGCTTAG TCAAAATAGG AAAGAGGGAA TATTAGATTT CTTCACCCGC 720
CCCCTCCTCC TTCCCCTTTG AGCAACTCCG CTGAAGCTCT CGGCTAGGGG AGGGGCGTCA 780
CGTCCTTGAA GCTGCAAATG CTTCCTGCAG AAAAATGGAG AGGGCTTGGG CTTACAGCGA 840
CTGGTGCTTT TTAGCAGCTG TGATTTTTTT TCCATTTTTC TTCCCCCCCC CCCCACCCCT 900
TTCCTCTCTG TTTTGATTAG TGGATCTCAC CGGGCTGTGG GGTAGGGTTT GTGCAGAGGG 960
AGGAGGGGCG CACGGCACCG AGCAACATTT CCGGGGAGAG CTCAGAGTTT GGGAGGGGCG 1020
AGTGAGGGAA GGGATTTATT GAAAATATAT GTCTACTTCG GCTATGATAA AGCAGCAGGC 1080
ATGTAAAAAT GCAACAGGGA AATCATTATT GCGGTAATGC AGGCAGGGGC TTCGCGTTCT 1140
CATTAGCAGA GCTCAGCCCA CGTGGAGGAG GGGGCGGCCG AGCTGCCTTG AGAGTTGGGG 1200
TATTCAATAA TAGCAGAAAC TCAAGGGAAT TCTCTCCACC TCCCCTGTGC GCCCCCCCCA 1260
CTCCCACCCC CCAGCTGCCT TCACTCTTTT CTTTTCCCCC CCAGTCGCTT TATAACCTTT 1320
GGAAAGCTGC TGGCCCGGGT 1340