EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-09988

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr17:46738880-46739910

Target genes

Number: 33
Name	Ensembl ID

Mad2l1bp	ENSMUSG00000034509
Gtpbp2	ENSMUSG00000023952
Xpo5	ENSMUSG00000067150
Polr1c	ENSMUSG00000067148
Yipf3	ENSMUSG00000071074
Gm88	ENSMUSG00000071073
Tjap1	ENSMUSG00000012296
Dlk2	ENSMUSG00000047428
Abcc10	ENSMUSG00000032842
Zfp318	ENSMUSG00000015597
Crip3	ENSMUSG00000023968
Gm5093	ENSMUSG00000091742
Ttbk1	ENSMUSG00000015599
BC048355	ENSMUSG00000040658
Cul9	ENSMUSG00000040327
Srf	ENSMUSG00000015605
Ptk7	ENSMUSG00000023972
Klc4	ENSMUSG00000003546
Mrpl2	ENSMUSG00000002767
Cul7	ENSMUSG00000038545
Rrp36	ENSMUSG00000023971
Klhdc3	ENSMUSG00000063576
Mea1	ENSMUSG00000002768
Ppp2r5d	ENSMUSG00000059409
Pex6	ENSMUSG00000002763
Gnmt	ENSMUSG00000002769
Cnpy3	ENSMUSG00000023973
Ptcra	ENSMUSG00000036858
2310039H08Rik	ENSMUSG00000062619
Rpl7l1	ENSMUSG00000063888
BC032203	ENSMUSG00000036568
A330017A19Rik	ENSMUSG00000073388
Tbcc	ENSMUSG00000036430

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Mafb	MA0117.2	chr17:46739826-46739838	AAAATGCTGACA	+	6.62
ZNF263	MA0528.1	chr17:46739159-46739180	CTCTCCTGCTCTCCATCCTCT	-	6.49
ZNF740	MA0753.2	chr17:46739547-46739560	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr17:46739548-46739561	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr17:46739549-46739562	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr17:46739550-46739563	CCCCCCCCCCCCC	+	6.03

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_09584

chr17:46737886-46740624

MEF

Enhancer Sequence

CAGTCAGTGT TACAGAGAAG CCCTGTCTAG AAAACAAACA AAAAAAATTT TTTAAGTAGG 60
TAGCTGAGCA TAGGTGTCCA CAGCCTGAAT TTCAATCTTT ACAACATACC TTCCTCCTTA 120
CATGCAGAGG ATCTCCTGTT TCCCCCAACT GTCTAGGTAT CTTCAGGGCC TCAACACCCT 180
GGCCCCACAC ACCCCAGCCT GTGTCTGGGT ATCCTCGGGG CCCCACACAC CCCAGCCTGT 240
GTCTGGGTAT CCTCGGGGCC CCACACATCC CAGCCCTGCC TCTCCTGCTC TCCATCCTCT 300
TTGCTCCAAA AGCCGTCTGA GAGGCTGGAC CTCAGCTGGC TTCAAAGGGA CATGAGCATC 360
ATTAGTCTCC TATTTTTATA TTTAGAAATG TTCTGCAAAC CACTTCCCGA GCAGCCAAGG 420
CAGCGGAATG TGAGGAAATG GCTTTGCTAT GTCATGATGT GGAAGGCCTG TGGCAAGCGG 480
CATCTGCCAC GTGGCCGGGA CGTGCAGTGA TGTCAAACAT ATGTGCAGGA GGCTGAGGCG 540
CCCCTCAGCA GCTGGGCTGT CCTTTAGAGG TAGGGTCCAG GAGTCAGGGC CACACTCAGC 600
CCGCCTTCCT TCCCAGAGAA GACTCATCCA CCTGTCTTTA CCAACAGCTG CTTCTGGGCC 660
AGCCCTTCCC CCCCCCCCCC CCCAGGCAGT GGTCTTAGGG GGCACTTCCC CAAAGACCTA 720
AAAGACAACC TGGGACACAA AGGGAAGAAT GCAGATCGAA GGGAAAACAA AAAACGAGGC 780
CGCTTGGAAG GGCTGATGGT TTGAGGCAAG GTTATTAGAT TCCTGGCCCC CAAGACTCTG 840
GGTGAGGGTC CTGGGAGGGG GCGGGCAGGG GTAGGATGGT GCGTGGAACC CTTGCCCGTG 900
CCACCAAACA CTGTCTTTTC TGCCACTTCT GCTTCCACGG GCCTGGAAAA TGCTGACAAA 960
TGTACAGGAG AGGTGGGCAA AGCCTTGCAA TGTGTCATAA ACGCAGCTCC AATACAGGAC 1020
TGAAGGTTCA 1030