EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-09963

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr17:46065690-46067210

Target genes

Number: 20
Name	Ensembl ID

Cdc5l	ENSMUSG00000023932
Nfkbie	ENSMUSG00000023947
Slc35b2	ENSMUSG00000037089
Hsp90ab1	ENSMUSG00000023944
Slc29a1	ENSMUSG00000023942
Capn11	ENSMUSG00000058626
Mrpl14	ENSMUSG00000023939
Tmem63b	ENSMUSG00000036026
Vegfa	ENSMUSG00000023951
Mrps18a	ENSMUSG00000023967
Rsph9	ENSMUSG00000023966
Mad2l1bp	ENSMUSG00000034509
Gtpbp2	ENSMUSG00000023952
Polh	ENSMUSG00000023953
Xpo5	ENSMUSG00000067150
Polr1c	ENSMUSG00000067148
Yipf3	ENSMUSG00000071074
Gm88	ENSMUSG00000071073
Tjap1	ENSMUSG00000012296
BC048355	ENSMUSG00000040658

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

POU4F1	MA0790.1	chr17:46065881-46065895	CTGAATTATTAATT	+	6.37
POU4F3	MA0791.1	chr17:46065881-46065897	CTGAATTATTAATTTA	+	6.03
RREB1	MA0073.1	chr17:46066283-46066303	AGCTGGGGGGTGGGTGGGGG	-	6.78

Enhancer Sequence

CTTACAATGC CCAGAGGCAA AGGTGCCACC AAGTTCAGAG GCAAGTATCC CTTGACTTGG 60
GAACAGATAT TTCAGTCGGT CGTATCTGTC CCTGACATCA CAGGGACCCA TTGTGTCCCT 120
GCTCAGACTA GCCTATTAGA AAGGGCTCAT TTCTGTGCAG CAGGCAATCT CGGACTATGT 180
TTTTTCCGTT GCTGAATTAT TAATTTAGTT AGTCTTCATA TCAAGAGCCT CAGAAAGATT 240
AAGAAGTATG GCCACCCAGC TGGTGGCTGG AGAGGCTAGG ATCTGAGGCA GGCAGTGTGG 300
CATGAGGCCA GTATGGTCTG AACTGTGGTA TTGGCCACCT CTCTGGGGCG TCGAGTCCTC 360
TCTGGCATCT GGCTGTGGCC AGGCACACCA CACAGCTCCC GTCTGGGGTG GGGTGGGGGG 420
GTTGTCACTG CCTCCTTCCC AGAACAACCT TCTGCTGAGG CAATTTGAGA GAGTTCTGCT 480
CATCCCCTCC CCCAGTCCCA GGGCCCTGCT CTACAGCACT GCTGGCCCTT CCTGACTTGG 540
AAGGTAGCTC TCTTACCACC CACCCCTCTC ATCGCCCTCA TCCTGAGCAG AGTAGCTGGG 600
GGGTGGGTGG GGGGAATGGG AGAGTGTCTG CAGCCTCTCT CCATCTCCTC TTCTTAGCCC 660
TCGGGTTCTG CAGAAAGTTC AAATGTGAGG AAAGGGCTCG TGGGAATTCA GAAACAGGCT 720
GCCTCAAATA AATTCAATAT GTAAAATCTG AGACCCTAAC CAAGGCCTCC CCTTTCCTCC 780
CCCTTTCCAA AATGACCTAT TATGGATGGC TTAGGGCCTG GTTGCATGGT AGAAACTTAC 840
TGATCTCTGA GCCCTGAGAT TCCATGATCC CAGCCACCCC TCTACACGAC CTCTGCTGGC 900
CCCCAAGACC ACAGGGCTCC TCTGAAAAGG CCTCAGCCCC CTTTCTCCTT GGTCCCACGG 960
ACTCCCTCGC CCTGGCCCAC CCTGTGTGGG AGGCAGCGTG TGGTCCCGTG TGCCCTCTCT 1020
GAGCACATGC CTGTACTGCA GCTGTAGCCA TGTCCTAGGC CTGTTTAAAG CTGAGTTATG 1080
AGCCTGTCTC TAAGTGCTGA GGAGCTGAGG TGGGAAAGGA TTTACTGGCT GCGTTCAGTC 1140
CTGGGCTTAT TGTTAAGTGA GCCTGGCTGA GGAGGTTCTG GCCTTATCCC TCCTGCGTTC 1200
CACCAAAATG GCCACTCTTC AAAGACTGCC TCTGGGGCCT CTCAGCTTTC TTCAAGGAGT 1260
CCAGGTTCCT TGCAGCGGTA GCAGAAGTGA CATTGTCCCC AGTTTCATGT ACTTAAGAAA 1320
TTGGTTGTGC GTGTGTGAAT GGGTGATGTA TGTGAGAACA CATATGTGCC AGGGCAGACA 1380
TGTACAGCCC ATTTTCTCCT CCCATCTTTA CATGGCTCCA GAACTTGAGT GGGCAGGCTT 1440
AAAGGTCAAG TGCCTCTTAC TAGCAAAGTC ATCCTTAACT CTGTTCTTAG CAGGTTTATT 1500
TTTCCAGCAC TAGGGTTTGA 1520