EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-06087

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr13:55835000-55836340

Target genes

Number: 21
Name	Ensembl ID

Rab24	ENSMUSG00000034789
Prelid1	ENSMUSG00000021486
Lman2	ENSMUSG00000021484
Grk6	ENSMUSG00000074886
Prr7	ENSMUSG00000034686
Dbn1	ENSMUSG00000034675
Pdlim7	ENSMUSG00000021493
Dok3	ENSMUSG00000035711
Ddx41	ENSMUSG00000021494
Fam193b	ENSMUSG00000021495
Tmed9	ENSMUSG00000058569
Caml	ENSMUSG00000021501
Ddx46	ENSMUSG00000021500
B230219D22Rik	ENSMUSG00000045767
Txndc15	ENSMUSG00000021497
Pcbd2	ENSMUSG00000021496
4930451E10Rik	ENSMUSG00000069223
Catsper3	ENSMUSG00000021499
Pitx1	ENSMUSG00000021506
H2afy	ENSMUSG00000015937
Cxcl14	ENSMUSG00000021508

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

CTCF	MA0139.1	chr13:55835094-55835113	TCCCGCCCCCTTCTGGCCC	-	6.22
SP2	MA0516.2	chr13:55835089-55835106	CTACTTCCCGCCCCCTT	+	6.39

Enhancer Sequence

ATAACCTGCT TGCTATCTCT ACTTTTTCAG GGCACTTAAA AAAATCTCCT TTTATTTGTG 60
CCTCTAAATT CTCTTCTAAG CTGCACTCTC TACTTCCCGC CCCCTTCTGG CCCGCAGCCC 120
TTGAACATTT CCTCAGACTC TGGCCTCCGC CTTGGAGACT GCCTTCACAG GTAACTGTTC 180
TGTTCGGGCC CCACCCTGTT CAGAGCGTCG TCTCCCATGA CCTAGCCTTC GCGAGTACTT 240
CGCTGCTTCT GTGTGAGGTC ATTGCTTTGG GCTGGTTCAT GTTTGCCCAG TTACTTTAGT 300
AATCCTTTGG ACAGATTTAT TGTTTTTATT TATGTCAGGT GTTGGCATCT AGAAGTCAGA 360
GACCGTGTTT GCTTAGCTCT CCATCGTGCG TAACATGGCT GGCTCTGAGC GCAAACAGCC 420
GTTGATTACC ATGTAGACAT TGATTACAGT GTTTGCTGGT TTCAAAAGGG TGTGTGAGCA 480
ACTTTTTTTT TTTTTTTTTT CTGGTAAATG CCCAAGGCTC TACTGAGTTG TCTGCCCTGT 540
TCTGTTTTTC TGTTGTCTGG CTGCCAGCCA TTTGCTGTGA GTCCCCAACT CCTGAGAAAG 600
CATGGACCAA AACTACTCCC TGTCCCTGCC ACCTCATGAG CTCTGCGGCT CTCGTCAGGG 660
GCTTAGCGCG CTGGCTGGTG GCTGGGAGCC TCGCTGGTAC AGTAAGCTGT ACATAGCTCC 720
AGGTAGCCTT TTCCGAGCTT ATTAAAATTC TTACATGTGT ACAGCTTGAC TCCTTTAAGC 780
CTGGGCTAAT TTATTGGGCT TGAACATGTG GCTTAAAGTA CCGAGTGGTG TTGCCTGGGG 840
CTCTGCCCTG AGTTGGTCCT CGGGTGCACT GAAGCCGGTG TGGGAGGAAA GCTGGGCAGG 900
GCATCTTGGA CTGACTGTGT CATCGCTCAC TGTCATGGTT CCTTCGGCTT TTAGGAAGGG 960
GAGCCAGCGT CAGTCACACA TCTGGGACTC GCTTCCCAGC AGGCTCTGTG ACTTCTACCT 1020
GGAGAGTGGC CTGAGCTGCC ACTGGTGGTG TGACCACCCT ATCCCTACCC ACACACAACC 1080
ACGACACACC TGGAACTAGC AAGGAGGACC CTGTCACTCA TGGTCACTGA GAGGGAGAGG 1140
ACACACTGTG TGCAGCATCC TAGGAAGAGC GTTAAAGACC TGGTGGTGAA ATTCAGTTTG 1200
CACCAGCAGG TTCGGAACAT CTCGAGGAAC CAGCTTTGCC CTCGGTTGGT GTTGCTAGGG 1260
AAAGGGCAGG TCTGTGATTC AGCACTTTAT GAATCTCGTC TTCAGGGAGG CTAGACAAAG 1320
GAGGAGATAG GGCTAAATAG 1340