EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-04624

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr12:8824660-8825340

Target genes

Number: 8
Name	Ensembl ID

Rhob	ENSMUSG00000054364
Pum2	ENSMUSG00000020594
Sdc1	ENSMUSG00000020592
9930038B18Rik	ENSMUSG00000042976
Laptm4a	ENSMUSG00000020585
Matn3	ENSMUSG00000020583
Wdr35	ENSMUSG00000066643
Ttc32	ENSMUSG00000066637

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Myog	MA0500.1	chr12:8824965-8824976	GACAGCTGCAG	+	6.62
RREB1	MA0073.1	chr12:8825022-8825042	GGTGGGGGGTGGGGTGGGGT	-	6.12
RREB1	MA0073.1	chr12:8825021-8825041	GGGTGGGGGGTGGGGTGGGG	-	8.54
Tcf12	MA0521.1	chr12:8824965-8824976	GACAGCTGCAG	+	6.14

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_02614	chr12:8782967-8832907	HFSCs
mSE_03232	chr12:8814352-8836695	TACs

Enhancer Sequence

ATCTCTGACA TGAAAGGATG TGGGGCTCAT CAAAGGTGCC AGAGACAGTC ATGAACGAAG 60
TGCCTGCATC AAAAGCTACT TCCGGCACCC CAGCCGCCTA TCTTCATTCC TGACTGTTGG 120
ATCCCTATTG TCAAAGCTGT CTTTGGGAGC TCCTGTTTGA GGTGCAAGCA GTCAGGAGTC 180
TTCATAAGCC CTAACCACAG TCACTAGCAG CCTGCAAGAG GCTGGGCTGC TCCCACGAGC 240
GCTGGCTCCC GGTCAGCTCT CAGCAGGTTC CCACAAGTGC TGTTCTCCAC CCCTGGGTTG 300
CAGAGGACAG CTGCAGACAG GCCTCCGGTC AGGCAGCTGG GAAGAATCAA GTGGGGCGAT 360
GGGGTGGGGG GTGGGGTGGG GTGAGTGAAG CAAGCAAGAA GGCCAGCTTT AGACAGGGTT 420
GGGAGGGAGA AGAGAAGAGA TGCCCGACCT GGGGTGGGCA GGACTCCAGA GAGCTGGAAA 480
TCTGACAACC ACTGGCCCAA TTCCTGCAAG CCAAGGCACT GTCTTCTGGT TTATCTGCCT 540
TCATCCTGGG TTCGGTGCCC TTAAGTAGAA TTTTCTATGC TGATAGAAAT GGGTCTTAAC 600
TATATGATAT GGTATGCTGG CCCCTCTCCA GCCCCCAGCA ATCAAATATG ACTAATGAGC 660
ACTTAAACAG CCATCATCTC 680