EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-04346

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:115640130-115641880

Target genes

Number: 33
Name	Ensembl ID

Ict1	ENSMUSG00000018858
Atp5h	ENSMUSG00000034566
Nt5c	ENSMUSG00000020736
Gm11694	ENSMUSG00000081376
Hn1	ENSMUSG00000020737
Sumo2	ENSMUSG00000020738
Nup85	ENSMUSG00000020739
Mrps7	ENSMUSG00000046756
Gga3	ENSMUSG00000020740
Mif4gd	ENSMUSG00000020743
Slc25a19	ENSMUSG00000020744
Grb2	ENSMUSG00000059923
2310067B10Rik	ENSMUSG00000020747
Caskin2	ENSMUSG00000034471
Tsen54	ENSMUSG00000020781
Llgl2	ENSMUSG00000020782
2210020M01Rik	ENSMUSG00000048442
1110017F19Rik	ENSMUSG00000075420
Rpl29	ENSMUSG00000087072
Sap30bp	ENSMUSG00000020755
Recql5	ENSMUSG00000020752
Galk1	ENSMUSG00000020766
H3f3b	ENSMUSG00000016559
Unk	ENSMUSG00000020770
Unc13d	ENSMUSG00000057948
Wbp2	ENSMUSG00000034341
Trim47	ENSMUSG00000020773
Trim65	ENSMUSG00000054517
Mrpl38	ENSMUSG00000020775
Fbf1	ENSMUSG00000020776
2310004N24Rik	ENSMUSG00000020778
Srp68	ENSMUSG00000020780
Exoc7	ENSMUSG00000020792

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr11:115641216-115641228	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641220-115641232	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641224-115641236	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641228-115641240	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641232-115641244	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641236-115641248	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641240-115641252	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr11:115641244-115641256	AAACAAACAAAC	-	6.32
ZNF143	MA0088.2	chr11:115640343-115640359	AAGTGCATGGTGGGTG	-	6.36

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_05083	chr11:115639793-115641867	E14.5_Heart
mSE_08307	chr11:115639862-115641898	Kidney

Enhancer Sequence

CTCTTCAATA CTACAGTGGG CTTGAAAGAT AGACCTGTAA CCCAGGGCTC TCAGAAAGCT 60
TCTTAGCTTA AAAAAAGGAT TAGGAGGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGGTG 120
ACACTCGCTG CTCAGGTGGT CTGTCTGGGT CACTGCTGCT GGGTGATTTT GGCTCCCATC 180
CCCTCTCAGA CCCAGCAGTC TCCAGCCTGT GGAAAGTGCA TGGTGGGTGA ACTGTTGCAG 240
TGAGAGCCTG GGCCCCTGCT CTGAGATAAC AGGGCCATTT TCCTATCATC GGAGCAGGCG 300
GCGTGGAAAG TGGGTGGAGA GAGTGGGTGG ACTGTGTTGG TGCCCTCTGA GGTGTGCCTC 360
GGAGCTGGGA GAGCTTTGCC CGAGTGCTTT CCACCCTAGC AGCAACTTCC TGGAGGGAGC 420
CCAGGGACAG AAGTCTTTCT CAGTGACTAC AGCTGATAGT CCTCACAGAG ACTGGCACCG 480
AAGCCAACCC CGCCCATCCC TCTTTCCTGC TCCCAACAAA GACTTCCTGC CCTTAACCTC 540
TGGACTGCCC AGCCCCTCCT CTCTGTCCCC ATTCAACTGT TTGGCAGGGG CCCCACAGGG 600
AGGTACACAG GCCAGGGAGG GGAGAGGCCG GGAGGCTCTC TTTCCCTTCT AGCAGCTGGA 660
GAGGGTGTAG TCTAGGAGAC AGAGGGCCCT GGAGAAACAC GCTCAGCCTC CAGCCTGCTC 720
TCTAGCCAAG GGACCCATTA GGTTGGGCTC ACTCCCTGGG CTGTTATATT GCCATACTGA 780
AGATGGCTTG CCCATTAGCA GAGGAATGTC CAGCCCCCTA CCAGTGCCTT ACCTCTTCCT 840
TCACCCAAAT GCCTGTGCTG GCTTCTTTTA TATCAGATTA GGGGCCCACA GCCATGTTTT 900
TAGAGCCCTA GTCACCTAGA CCCTGCTTTT GCCTGTGTCT GGTCTTGGTG ACACACTCCT 960
TTAACCTCAC TCAGTACACA GGAGACAGGC AGGTCACTTG CGTTTGAGGA CAACCTGTTC 1020
TCCATATATA GTTTTTTTTG TTTTTTGTTT TTTTCAAGAC AGAGCTATAT AGAAAGACCC 1080
TGTCACAAAC AAACAAACAA ACAAACAAAC AAACAAACAA ACAAACCAAA AGAAAGATCC 1140
AGGCACTCCC AGATCCCTGC CGTGCCCAAA TGCACGTTGC CCTTAGTGGG TCAGCAGCTT 1200
GTGGGCTCTC CATGTCTCCT GGAAGGAAGG TGTTGAAATC CTGAGAAACT CCTTTTAGCT 1260
GGCCTTACCC TCTCCCAAGG CTACTGGTTT CTCCCTTCCA GCAGACTCCG AGCCTCCTAG 1320
AAATCCGTGC TGGAATCCCT GCTGGCCCCC TTGTGCTGCT GTTAATCAGG CACCAGCCCT 1380
CTGCCCCATT CCTGCAGCTC GCAGCATCTC TGTGTGCAGC TCACACTTCT GTGGGCTGGG 1440
TTGGCAGGCA CTCTGGTGGA TGATGCGCTC AGCCACAGTG TGGCCCCAGT GACCTGGGTC 1500
ACAGTGGACA AGTAGTCTGG GAAGAGAGCC TGTGTCTGTG TCCCTCGGGG TACCTGGATG 1560
CCAGCATGTG CCCTCAGCGG GTCCCAACCC CTTGACGGTT TCTTTCATCT CTCCACATAC 1620
CTCTCCCTCC ATCTGGCAGC CCTCTGTCTG CACCTGTGCT TGCCCTGCAT TAGCTTCCTC 1680
TGAAGGGACA TCTCTCGGGC ATCTGGTAAA TTGTGGACCA ACTTTTGCCT CTCGACCTCC 1740
TTTCTTCACC 1750