EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-04039

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:101662510-101664020

Target genes

Number: 24
Name	Ensembl ID

Psmc3ip	ENSMUSG00000019303
Ramp2	ENSMUSG00000001240
Vps25	ENSMUSG00000078656
Ccdc56	ENSMUSG00000017188
Psme3	ENSMUSG00000078652
Aarsd1	ENSMUSG00000075528
Rpl27	ENSMUSG00000063316
Ifi35	ENSMUSG00000010358
Rnd2	ENSMUSG00000001313
Brca1	ENSMUSG00000017146
Nbr1	ENSMUSG00000017119
Rdm1	ENSMUSG00000010362
U2	ENSMUSG00000065767
Arl4d	ENSMUSG00000034936
Dhx8	ENSMUSG00000034931
Etv4	ENSMUSG00000017724
Meox1	ENSMUSG00000001493
Sost	ENSMUSG00000001494
RP23	ENSMUSG00000093467
Dusp3	ENSMUSG00000003518
Mpp3	ENSMUSG00000052373
Cd300lg	ENSMUSG00000017309
Mpp2	ENSMUSG00000017314
Tmem101	ENSMUSG00000020921

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HLTF	MA0109.1	chr11:101663148-101663158	ATATAAGGTT	-	6.02
SP2	MA0516.2	chr11:101662698-101662715	CTTACCCCCCCCCCCTC	+	6.01
ZNF740	MA0753.2	chr11:101663480-101663493	GCGCCCCCCCCCC	+	6.1

Enhancer Sequence

GAACTCACTC TGTAGACCAG CCTAGCCTTG AACTCAGAGA TCCACCTGCC TCTGCCTCTG 60
TGAGTGCCTG GGATTAAGGC GTGTGTCACC AAGAATAGAT TCTACTTGCT GTTAACAAAT 120
GTCCCTATCA GCACCCCTCC CCCCATCTGA TCTGAAATTA CCTGCTGCGC TGCGCTGAAG 180
GACCTCAGCT TACCCCCCCC CCCTCAGCCT TCCAAGATGG GAAGCTGGGT GTTGCAAGCT 240
CCCCAGACTT CACCTCACCA CCACTCTGAT CTCAGAACCT TCCCTTCCCC TCCCCTGTGA 300
TTATGATAAA CCCCCTGGAG CTAGTGGGCA GGCTCAGCTG GGCCTCCTGC CTCTTTGAAG 360
TCCCAAGCCA AATTCCTAGT CCCACATACT GACTTCTGAG AAAGCTGCTT CCTATCAAAT 420
CCTACCGCCA AAAAGACGCC CCTCTTAGGT ATTCCTGCCA ACTCCGTTTT ATAATCTCCG 480
TGCTGGGGAG GGAGGACAGT GCAGGCACTT TGTCTGCAGG AAGGAAGCAA TTAAATTATT 540
AGCACTTTGA GAAATTAAAC GACATAACTT ATGGTGGAAT AAGTTTAGCA AAAAGAAAAA 600
AAATCCCTTG TAATGTGAGA AAACAATTAA AAAGAATTAT ATAAGGTTGG GCTCTCTCCT 660
TTATGGCAAT AGAGTTAGCA GTTCATTGAT TATCGTCCTT ATAATGCAGC AGGATGGTGC 720
GGGCTGCTAT GGTGGCAGCC ATGTTCAGGA AGCTAAACGC TTAGCTGGGT CCTATAAGAG 780
GGCACAGGGT GGGGGCAGGG GGGGCAGAGG ACGGGAGTTG GGGGTGGGGA GAAGCGCTGA 840
AAGGCTTTCC TGGAGGGGTG GCAGGGAAGG AGAGTGAGGT CAGGAGGGGG AGCACCAGAC 900
CAGCCTCTCC TGCAGCTCCC CGACTTTTCT GCTTCGGGAG TTTGTCCCTC TCAGCCTGCC 960
TATTTCCTGT GCGCCCCCCC CCCATCTCTG TTTCTAGCTA TTCATCCCAG CGAAATAGGG 1020
ACGCAGCTTC ATAAGGAGGT AAAGATGTGG TTGGCCAGCT GAGGAACCCT CCCTAGAACA 1080
GGAACCAGCC AGGCAGGTGG ATACTTTGGG ATGCAGCGGA CAGCACAGAA AGTGATGGCA 1140
GAGCCTCGTG CAGAGGTACC CCAAGTTTAG GGCCCCAAAC TACAGCTGCC CGTGACCATC 1200
ACTTAGAAAC TTCTCCTAGG CCGACTGATG GAAAGAGGCA AGATATGAAC TAGGAAGGAG 1260
TTGGCTATGA TGTCCTATAG ATGAAGTTCT AGAACAAACT CAAACTGGGC ATGGTGGCAC 1320
ATGCCAGAAA CTCCCAGGAT TACACTGGGA GACGGAGGCA AGGATTGGTG GTTTCGTGGA 1380
CAGCTTTGTC TACATAGTGA GTAGGAGACT AGCCTGGGCT ACATGAAATG CTGTTTCACT 1440
ATCCCCCCCC CCCGAAAAAC TACAGCAAAG GGACAGATTT AACCAATGGG TGGTGACAGG 1500
ATCGGGAATA 1510