EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-04011

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:101031030-101032030

Target genes

Number: 25
Name	Ensembl ID

Nkiras2	ENSMUSG00000017837
Kat2a	ENSMUSG00000020918
Rab5c	ENSMUSG00000019173
Stat5a	ENSMUSG00000004043
Stat3	ENSMUSG00000004040
Ptrf	ENSMUSG00000004044
Naglu	ENSMUSG00000001751
Coasy	ENSMUSG00000001755
Mlx	ENSMUSG00000017801
Tubg1	ENSMUSG00000035198
Tubg2	ENSMUSG00000045007
Plekhh3	ENSMUSG00000035172
Ccr10	ENSMUSG00000044052
Vps25	ENSMUSG00000078656
Wnk4	ENSMUSG00000035112
Gm11615	ENSMUSG00000085083
Cntd1	ENSMUSG00000078653
Ccdc56	ENSMUSG00000017188
Aoc2	ENSMUSG00000078651
Aarsd1	ENSMUSG00000075528
Rpl27	ENSMUSG00000063316
Ifi35	ENSMUSG00000010358
Rnd2	ENSMUSG00000001313
Nbr1	ENSMUSG00000017119
Rdm1	ENSMUSG00000010362

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr11:101031117-101031135	CCTTGCTTCCCTCCTCCT	-	6.02
RREB1	MA0073.1	chr11:101031079-101031099	ACCCCACCCCACCCCCCACA	+	6.12
RREB1	MA0073.1	chr11:101031075-101031095	TCCCACCCCACCCCACCCCC	+	6.1
RREB1	MA0073.1	chr11:101031080-101031100	CCCCACCCCACCCCCCACAA	+	7.38

Enhancer Sequence

TTCTGAGTGG GGCTATCCAC CCCTCTACCA GAGGGCAGGT ACTGATCCCA CCCCACCCCA 60
CCCCCCACAA CTCCCCTAAT CTCAGTCCCT TGCTTCCCTC CTCCTCCCCT CTATATTTAT 120
CTGCCCTCTG CCTCGCCAGG TGCTGGCGCC TGCACTGGCT GCGGTGCCGC CCGCCCCACC 180
CAGGAATGGA GCCACCGGAC TTGCTGGGGA CCCCTGAGCG GGGTTGGGGG GAAATGGGAG 240
CTGGACCCAG GCCACAGCAC ACAGAAGCCT GGTTGCCTCT GGTGGGTAAG GACGTGAGAG 300
AGGTCTCCTC GAAAGATGGA GGTCTTACAC ACCAACTGTG CCTGAGTGTC TCTCTCCCAA 360
AGGAGATTTG ATTAAAAAAA ATTTTCAGCC ACCAAGTCAC CCTCACCCAT TCCCTCTGGT 420
TTCCCAGGAA CCTCACCAGA GAAGGCAGAG AGTTCTGTCT TAAGTGGCGG AATAATGAGA 480
AGTCCTCAAA GGGCCATCGT CCCGAGCCTT TTCTTTGTGG GGTCCCTGAT GCAGACCCCA 540
ATTCTAGGAT GTCTTTTTGC CCTCGCCCAG GATACTGCGG TGGGAGCTCC CGCATCTGGC 600
CCCAGTGCTC TTGAACTGAG AGCAGAGCGA ACCCAGGCGT TCCAGCCGCC CAGCCGGCCT 660
CGCCACATTC CTTGGCTCTG GCGGAGGCGG AAGGAGACGG GATGGGACGC GGGCCCGGCA 720
GGGAAGGGAG AGGCAGGGCC AGGTTGGGCC ACGCGTGACG CCTCCTCTGC CTCAGGGCCC 780
CCAGCAGGTG GACAGCGCCT TGTGTGCAGC GCGAAGCCCA CAGGCGCATC CCTAGTAGGG 840
CTACTTGCCC CTGGAGCTCC CGGGGCTCTG GCCCTCAGAC AAGAATCTCC CCCACATTTG 900
CAGTTGGCCA AGAGGACTGC GTTTGGCCCA AGTATGGAGC AGGCTCAGGC GTGACGGCCG 960
GTTGTAGTGA GAAAGATTGA ACTCGGTTCT AAATCCCTGT 1000