EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-03949

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:98628160-98629240

Target genes

Number: 21
Name	Ensembl ID

1810046J19Rik	ENSMUSG00000002580
Grb7	ENSMUSG00000019312
Ormdl3	ENSMUSG00000038150
Psmd3	ENSMUSG00000017221
Gm12356	ENSMUSG00000085955
Med24	ENSMUSG00000017210
Thra	ENSMUSG00000058756
Nr1d1	ENSMUSG00000020889
Msl1	ENSMUSG00000052915
Casc3	ENSMUSG00000078676
Gm12359	ENSMUSG00000075576
Rapgefl1	ENSMUSG00000038020
Wipf2	ENSMUSG00000038013
Cdc6	ENSMUSG00000017499
Rara	ENSMUSG00000037992
Gjd3	ENSMUSG00000047197
SNORA32	ENSMUSG00000065262
Top2a	ENSMUSG00000020914
Igfbp4	ENSMUSG00000017493
Tns4	ENSMUSG00000017607
Smarce1	ENSMUSG00000037935

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

PLAG1	MA0163.1	chr11:98629060-98629074	CCCCCTTGGGCACC	-	6.39
TCF4	MA0830.1	chr11:98628268-98628278	CGCACCTGCT	+	6.02
ZNF263	MA0528.1	chr11:98628619-98628640	TGGGGAGGGTGGGGGAGGAGG	+	6.11
ZNF740	MA0753.2	chr11:98628560-98628573	CCCCCCCCCCCAT	+	6.07
ZNF740	MA0753.2	chr11:98629164-98629177	CCCCCCCCCCCAC	+	6.92

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_02661

chr11:98609039-98644811

HFSCs

Enhancer Sequence

GCCCTTCCCC TCCCCCTCAG TGATGTGGAG TGTATGTGTG TGTTCCTTCG TGTGAGTGGA 60
TGAGTGAGTC TACGTTGTGG GAGGAGCCAG AGAGACTCAG GAGTGCCACG CACCTGCTCT 120
AGAGAGGCAG CTGTCCCAGT CCCTGCCATG GAAGTGGGGG ACAGGGCCCT CTCCTGGGGG 180
CCATTGGTGC TAATGGGGGG ATGGCCTTGG CATGGGTGCT TAGCATGCCT TCCCCCAATG 240
TTGGCCCGGG GCACTAGGGC AGGCCGGGTG GGGCAGCAGG TGCAGTATTG ATGGGAGGGG 300
TGGGTTGCTG GGAGAAGGTT GGGGGGGCCA GGCCAGGACA AGGGGGTGCC AGAGCCATGA 360
CCACTACCCT GCCCTACCAC TGCCTCTCCA TCTCAGTATT CCCCCCCCCC CATCACTTAT 420
AACACACATA CCTCATCCAG CCTCCTCCCT GCTCAGACTT GGGGAGGGTG GGGGAGGAGG 480
AGCCCCTACC CCTTCCCCGG GCGGTGGGCT GGGAGAGAGC AGGGCGTGTG ACATGGACAC 540
CGTCCGTCCA TCCATAAGGG GGAAATTACT TCCTGCCCTA GGAACTCCTG GGTGGAGGAG 600
GGGGACACTA CCCAGAGGCG CTACTGAATG TATGAGAAGC TGGTGCTGAG GTGGGGGGAG 660
GGGTTGTGGC TAGAAACAGG GAAGGAGATA GGTCCTTTCC CCAGAGATGG GTGGGACCGG 720
CAGGGGTGAC TTGAGGGGCT CCTCCTCCTG CCCCACAGTT GACAATCAGT ATGTCTGTTA 780
TGTGCGAATT TTTCACCCCG TTGTGTTTTG GGTCAGGATT TTAAAGAAAG ATATTTTTAT 840
GGTAATTGTT GCTCGTCTAT TTTACTATAT ATTTATGTAA TAAATATATG ATGAAAATAA 900
CCCCCTTGGG CACCCCCCCT TAGACTTGCG TGCTGTTTCC CCATATTCTC CCATCTGCTG 960
GCAGAGTACC CACCCCACAA GCTGACCAGA TGGAGAGGTG TCTTCCCCCC CCCCCACACC 1020
CCCTTGGCAG TAGTCCCCCA CCCCCACCCC AATTCCCCAA ACGAGCACAC ATCACAGAAG 1080