EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-03910

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:97487480-97488700

Target genes

Number: 27
Name	Ensembl ID

Cdk5rap3	ENSMUSG00000018669
Scrn2	ENSMUSG00000020877
Mrpl10	ENSMUSG00000001445
Kpnb1	ENSMUSG00000001440
Npepps	ENSMUSG00000001441
Mrpl45	ENSMUSG00000018882
Socs7	ENSMUSG00000038485
Arhgap23	ENSMUSG00000049807
Gm11611	ENSMUSG00000087042
2410003L11Rik	ENSMUSG00000085860
E130012A19Rik	ENSMUSG00000043439
Gm11613	ENSMUSG00000085586
Mllt6	ENSMUSG00000038437
Pcgf2	ENSMUSG00000018537
Psmb3	ENSMUSG00000069744
Gm11614	ENSMUSG00000085145
Pip4k2b	ENSMUSG00000018547
Cwc25	ENSMUSG00000018541
Atp5l2	ENSMUSG00000084168
Rpl23	ENSMUSG00000071415
Lasp1	ENSMUSG00000038366
B230217C12Rik	ENSMUSG00000050538
Fbxo47	ENSMUSG00000070336
Arl5c	ENSMUSG00000038352
Rpl19	ENSMUSG00000017404
Med1	ENSMUSG00000018160
Stard3	ENSMUSG00000018167

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Lhx3	MA0135.1	chr11:97487514-97487527	AAATTAATTAAAC	+	6.28
ONECUT3	MA0757.1	chr11:97487780-97487794	GTAATTGATTTTTT	-	6.06
ZNF263	MA0528.1	chr11:97487920-97487941	GCACTCTTCCCCTCCTCCTTC	-	6.17
ZNF263	MA0528.1	chr11:97487930-97487951	CCTCCTCCTTCCCCCTCCCCA	-	6.48
ZNF263	MA0528.1	chr11:97487923-97487944	CTCTTCCCCTCCTCCTTCCCC	-	6.63
ZNF263	MA0528.1	chr11:97487924-97487945	TCTTCCCCTCCTCCTTCCCCC	-	7.1

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_11725

chr11:97485603-97490698

Placenta

Enhancer Sequence

AAGTTTCTCA GAGCTTGGAG CTCTGAAAGT CTTGAAATTA ATTAAACCTT GCCCAGAGGG 60
TAGTTCTAGG TCTGACCAAA AGGTGTTAGG TGGAGGCTAA ACCCTTCCAG TGGGGAGAGA 120
GGAGCCGAGC GACCCCATTC CTTCCAGTTG CTCAGAGAAG GCACTCTGCC CAGAGCTGAA 180
TCTTTCTACC CGGCAGCTCC AGACAGGCTA AAAGACACAA ATCCCATCCA AAAGACACCA 240
CTCTACCAAA GCAGGGAAAT TACCATGAGC GTGGCGTCTG CCTTTCTCAA CTTCTCCCTT 300
GTAATTGATT TTTTTTCCGG GGTTTTCTCC CCACTCCCCA AAATCTCCCG TTTCCCTCCT 360
GCGGGGGTGG GGGCTGGGGG TGACGCAAGG GCTAGGGTGG GAGGGAGATG ACGGATACCT 420
TTGCCCCATC GGAATGGATA GCACTCTTCC CCTCCTCCTT CCCCCTCCCC AGGACACAGC 480
TGGAGGGGGG AGGGTAGGTC AACCGGGTTC ATAAAGGCCA GATGTTAAGG AAAAAAGAGC 540
CAAAGCGCCC ACCCACCCCA TCCCTTCCCT CTTCGCCCCC CACCCCGGGG AAAGGGGAGA 600
GCTCTGAAAA GACTTTTGAG GTCCAAGAGT TTCTCCCCAA GAATTTACTC TGTGCAAACG 660
ATAAACATTT TTACAAAGCA TGGTCACCAA AAAAAAAAAA GAGAGAGAAA CACACAAACA 720
CACGTCCTTC CCAGTGTCAC GTGGGAACAC TTGCATCAGG TAGACACAAG GGCCATTAGA 780
GCCCTCAGTA GCCGGCAGCT CTCAAAAGCA CGTGCTCGCA GCATAACTCA CCTACCCTGA 840
ACCTGATCAC TCGGTGTAGA GAAAGCCACT CCACCCTTCT GACTAAAGGA GTCAGTCCTG 900
ACTGGGGCGT GGTCCAGGCC TAGCTCCTCT CAGTCCGGAA AACAGAACCT CTGACCCCAA 960
ACCTAATCCC CCAGGCCCTG CCCCCTTCTG ATCCATCAGA TCCCTGTCAA CTCCCTAAAT 1020
GCCTGAGGCC AAGAAAGGTT TAAGGTAGCT CGCCCAGCAC AGGTTCCCTC CACGCCCCAG 1080
AGACCGCTTT CACTTGCCTT CCTCCAGTCT GTTTTGTACC CACCCGTGTT GGGTGTCTTT 1140
AGTATGCTTT CAAATTAGCC TTCTACCTAC CCACCCGCCC CCATCCCATT CATAAATCGG 1200
AGGCAAGGAC CTCGAAAGAC 1220