EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-03478

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:77700510-77701540

Target genes

Number: 24
Name	Ensembl ID

Trp53i13	ENSMUSG00000044328
Myo18a	ENSMUSG00000000631
Gm10277	ENSMUSG00000069804
Pipox	ENSMUSG00000017453
Sez6	ENSMUSG00000000632
Phf12	ENSMUSG00000037791
Dhrs13	ENSMUSG00000020834
A030003K02Rik	ENSMUSG00000087050
Flot2	ENSMUSG00000061981
Eral1	ENSMUSG00000020832
BC017647	ENSMUSG00000037750
Gm12571	ENSMUSG00000060727
Traf4	ENSMUSG00000017386
Nek8	ENSMUSG00000017405
Rpl23a	ENSMUSG00000058546
Rab34	ENSMUSG00000002059
Proca1	ENSMUSG00000044122
Sdf2	ENSMUSG00000002064
Supt6h	ENSMUSG00000002052
2610507B11Rik	ENSMUSG00000010277
Spag5	ENSMUSG00000002055
Pigs	ENSMUSG00000041958
Unc119	ENSMUSG00000002058
Tmem199	ENSMUSG00000051232

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr11:77701346-77701366	CCTCCCCCCAACCCCCACCC	+	6.16
RREB1	MA0073.1	chr11:77701349-77701369	CCCCCCAACCCCCACCCACC	+	6.26
RREB1	MA0073.1	chr11:77701350-77701370	CCCCCAACCCCCACCCACCG	+	6.71
RUNX3	MA0684.1	chr11:77701386-77701396	TTTGCGGTTT	-	6.02
ZNF263	MA0528.1	chr11:77701143-77701164	GGAGAAGGCGGGGCAGGAAAG	+	6.05

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_04428	chr11:77698990-77702042	E14.5_Brain
mSE_10088	chr11:77698129-77701620	Embryonic_stem_cells

Enhancer Sequence

GGGAACCCTA GCAAGTTTGC AACTCCTACC TCCCAGAATG TCCATCACCT TAACAGGGAG 60
CCCTGGGTAT GGAGTCCGCC TTCCTCACAG CCCACTTTGC TCCAGAAGTG AGCAGAGGTC 120
GCTGAAGAAC CCTCTGGACT GTTGATGCCT CTGTGGCCCA TGTACCACAG GGTCTGATCA 180
CGAAGCAGTT ACTAAAAGAG GCCTGGGGTC AAGGGGGAGA GGAGAGCAGA GAGGTCCTGG 240
GAGGGGTGGC CAACTCTCCC GGAATCTTCC ATTTCACACC CTGGGGCCCT GGCTGCCTTT 300
CTCTTTGCTC CGGTTTAAAG TGCCAGGTAT GCCAGCCCTC GGCATCACCT TGGGGAAGGG 360
CCTGGTAATG GCTGCTGTCT TTGTAGGTTT GGGAACAGCT CTCTGTATTT CATCTTCCGC 420
TCAGTGGGCC GAGGTGGAAT TGGTTAACAA AGATTGCTCC AGGGAGGGGA TGTGGCTGAC 480
AAGCCAGACA CTTCGCAGGC ACAGGAAGCA GCAGCTGCGG AGGGGGCCAC CAGGTTCTGC 540
CAGCTGCTGT ACTGCCTACG GCTGTGATCT TGTCTGATAT TGTCAGTGAA GCAGGGGCAG 600
CCCGGGTCAG GAGCTGGATA GTAGAACTCA AAGGGAGAAG GCGGGGCAGG AAAGAGATGG 660
TCTCAGAGCC TGGCTTTTCT GTTGGTACCA GCATCCCGGC TGCACACATC ACAAAAGACT 720
CGGGCCTTAT GATCCGACAC ATGTCATTGT CTGTTCCCAG AATGTATGCA AATAACCCGA 780
GCCCACCCGT GTTTCATATG CGCTGTCACA GGAAGCAGAA CAGAAGAACT GGGCAACCTC 840
CCCCCAACCC CCACCCACCG CTGGCTCAGA AAGGTTTTTG CGGTTTTTCA AATCATCATC 900
AGATGACATT AAATACACTC ATTTCTATCA TTTATCGTAT GGTATTATGC CGGTGTGTCT 960
AGAAGGATCC AGAGAGAAGC AAGAACGACA GAGATGATGA AATCATTTAG AAAATCAAAA 1020
TTAAAAGCAA 1030