EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-03387

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:75026840-75028670

Target genes

Number: 26
Name	Ensembl ID

Pafah1b1	ENSMUSG00000020745
Mettl16	ENSMUSG00000010554
Sgsm2	ENSMUSG00000038351
Tsr1	ENSMUSG00000038335
Smg6	ENSMUSG00000038290
Srr	ENSMUSG00000001323
Gm12333	ENSMUSG00000085765
Gm12335	ENSMUSG00000085738
Hic1	ENSMUSG00000043099
Ovca2	ENSMUSG00000038268
Dph1	ENSMUSG00000078789
Rtn4rl1	ENSMUSG00000045287
Rpa1	ENSMUSG00000000751
Smyd4	ENSMUSG00000018809
Serpinf1	ENSMUSG00000000753
Serpinf2	ENSMUSG00000038224
Wdr81	ENSMUSG00000045374
Tlcd2	ENSMUSG00000038217
Prpf8	ENSMUSG00000020850
Rilp	ENSMUSG00000038195
Scarf1	ENSMUSG00000038188
Slc43a2	ENSMUSG00000038178
Pitpna	ENSMUSG00000017781
Gm12338	ENSMUSG00000081485
Crk	ENSMUSG00000017776
Ywhae	ENSMUSG00000020849

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr11:75027568-75027588	GGGTGGGGGGTGGGGTGGGA	-	6.75
RREB1	MA0073.1	chr11:75027561-75027581	TGGGGCGGGGTGGGGGGTGG	-	6
ZNF740	MA0753.2	chr11:75027755-75027768	GGGGGGGGGGGGG	-	6.03

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_03815

chr11:75024331-75028688

Cerebellum

Enhancer Sequence

GGAGAGAGAG AGAGAGAGAG TGTAAAGGGC CCCTGGGAGC CTATCTGAGT ACACACCCAG 60
CAGGTGCAGG TGTTTTTAGC ACACTCACAG AGCCCGGTGG GAACAAGGAC ACTCCCCTTT 120
CCATTTCTCT GCTGCAAACC CGGCCTAGTG GGGCAGAGCG CACCAGGCAA ACTCGCAGCG 180
CTGCCTCGCT GCCTCGGATA GGAAAGTGCC AGGGCGACCT TAGTGACCAG ATCCCTGGAG 240
GTCGCACAGC ACGTGCCTAG TCCACATCTG TAAAAAGGGG AGCGTGACAC TGTTCAGGCT 300
GCTGTTAAAC AGCTTGTGAG GTGGCTTAGG ATGTCCTGAG CTGGATAGGG GCGCAAGAAC 360
TGGGATGGGA CTTCGGATTC TAGTGCCTGC TGAGGCTCCC AGTGACCAAG TAGCTCAGCA 420
ACCCAGATCT GTCAGCGCGG CTGGTGGCCT GGGGGTAGGG GGGCTGCCAC TTCAGGAGCA 480
TCGCTTCTGG GCACGGGGCC TGGCATCGCC CTCGCCCTTT GCCCGGCCCG GCAGCTACAG 540
ATCGATGCGA CAGCCCTCCC TGCCCCTCCC CCAACGGCCA AACAAAACAT AGTAAATATT 600
TAATCCGGGC CAGGGAGCCA AAGAGGCCTC CCCGCCCCCT CCACAGCCGT CTGGCTCCTC 660
TGCCAGCCCG GGCTGCTCTC TGCGGTAATG AGGCCGGGAA CGGCAGGGAT CGATCGCGGC 720
CTGGGGCGGG GTGGGGGGTG GGGTGGGACT CCCTGTGCCC TCGGGGTGGC ATCTCTATCC 780
ACCCCAAGCA CCGGATTAGG GAGCCTATTC AATGCACACC CGCATCCTCG CTTTTCCAAG 840
AAGGTCGATG GGAGGGGCGG TGAGTCCCTC ACTGGGTACA CCCCTGCTTA GAGGCCAAAT 900
GTGAGCAAGC CGGTTGGGGG GGGGGGGGAG GGGGGCTATG AGGGAGTAGG AGTCCTGTGC 960
CTGGCTCATA CCTGAGCTTG TGCCCCAAGA CCGGACCTGA TTTTTCAGGC CTAACGTCTG 1020
GGGCTAAGGG TGGGGGGAGG CAGGGCAGAC AGAGAGACCC CTAGAGAGAA ACCAAGCCAG 1080
TGGGTTTCCT GGCTTCTAGT TACACTGTAC TGGCTTAGAG GATACCTAAG GGAACTGATG 1140
ACGTCTTTGC TGCTCTATTT ACATAGTAAT CTCTGAACAC CTACTGTGCG CTGAGCCACT 1200
AGCTGCCAGC CTAGAAACAC ACAGGCCCAA GTTGCAGACA GATTGCATTT CGAAGAAGAG 1260
GATTGATAAC TAAACCCAAA AGATGATTTC AGCTAGTGGT TGTAATTTGA TACTGTGCTT 1320
GGCTAGGGAA AGAACTTTAG CTGAGGTGGG CAGGATGACT GTGGGTTGGG TTAAATCATC 1380
CCAGACAAAT TTTAGAGCAG GTGCAAAGGC CCAGGGGCAG GGACAAAACC GGCCTGCTCC 1440
AGGACTGGGA GGAAGGGCCT ACAAGGTTGA ATGCAGGGAG CAGGAGGAAG TAGTAGGATC 1500
CAAGGATCTT GTAGGCTGAG GGAGGAGTTT GCATTTTGTT CTAAGTGCTG TGTGATGGCA 1560
GAGATTTCAA GCAAAGGAAT GACATGTCTG ATTTACCTGT TTTAAAAGCT TCCGCTGGCA 1620
GGGGGTGGGC AGAGAAAGGA AGGCGGAGAG TTAAGAGAAG GGCACGGGTT GGTGGGAGGT 1680
GGTTTAATGG TAGCCAGGAG GAAGGCTGGT GCCTTCCTGT AAATGGCCGT TTATACTCCA 1740
GCAGGTGAAC GGGCCCAGCC AGAAACAGCC TGCTCTTGGT GCACCACCCA TGGGGGTCTG 1800
AGCAGAGACC AAAACTGAGG TGGCCACTGT 1830