EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-03125

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr11:59212700-59214040

Target genes

Number: 19
Name	Ensembl ID

Rnf187	ENSMUSG00000020496
A230051G13Rik	ENSMUSG00000049287
Guk1	ENSMUSG00000020444
2610507I01Rik	ENSMUSG00000085882
Mrpl55	ENSMUSG00000036860
2310033P09Rik	ENSMUSG00000020441
Gm10434	ENSMUSG00000072898
Arf1	ENSMUSG00000048076
Wnt3a	ENSMUSG00000009900
Wnt9a	ENSMUSG00000000126
Jmjd4	ENSMUSG00000036819
Snap47	ENSMUSG00000009894
Zfp867	ENSMUSG00000054519
Gm12263	ENSMUSG00000084145
4933439C10Rik	ENSMUSG00000072893
Zkscan17	ENSMUSG00000020472
Nlrp3	ENSMUSG00000032691
Mprip	ENSMUSG00000005417
Cops3	ENSMUSG00000019373

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MYB	MA0100.3	chr11:59213207-59213217	ACCAACTGTC	+	6.02
RARA(var.2)	MA0730.1	chr11:59213324-59213341	TGGCCCTCAGGTGACCT	-	6.03
RREB1	MA0073.1	chr11:59212756-59212776	CCCCAACACACACACACACA	+	7.29

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_09992

chr11:59211700-59213115

MEF

Enhancer Sequence

ATCTTAGAAG ACATTCCCTG TGGATGTGTG GGCACTGTTC CAATGCTATC AGGTCACCCC 60
AACACACACA CACACACACA CACACACACA CACACACACA CGATGGTGTG TTCAACTGCA 120
CACACCAAGG GTGGTGCTCC TGTTCCCAGC CATTCCTCCC TCTCCCCGAT AGAACTGGGA 180
CCTGCCTTCT GCTGCTGGCC TGATTTGTTT CATCCCCCTT TGGCTCCTGC CTCCAGGAAG 240
CCCTCTCCTT CTTTCTTGGG ACCAGGGGCT TGTTGAATGA TTCCACAGCT AGGAGTATGA 300
TTTCTCCGGT ATGTTCCTGG AGATCGGGGC CCATGTTAAA TGGGACTAGG CAGATAGGAT 360
TTCAAAATGC AGTGTTATAA AGAATCCAAG ACATTCACAT TCATCTCCCA AGACAGAGGC 420
TATCTGCTTG AGATCGTCTT GACTCTTGGA ATCTCTCTGT CCTCATGGCC CCCAGTTGCA 480
CAGCCCTGAT CTGGGGCTAG CTGACAGACC AACTGTCTTG ATTCCTACAT ATGGGAAAGG 540
TTGAGGGATT CCAAGGTGGA GACCAGTGAG ATCAAAGAGG CCCAGCCTTT CTGTCTCTTG 600
GCTCTTTCCT CTCTTGGACT GCTATGGCCC TCAGGTGACC TATACCCATG ACCATCAAGC 660
CAGACATGAT ATCCTCTCTC AGACCAGCCT GTGTGCCAAG CAAGGTTTCT GGGCCCACAG 720
TGCTTCCATC TCACTGATTT CACTGCTGTA AACACCATCC GCCACGATAT AAACCATTAA 780
ATTAAAAACA TGTCTCACAT GTGGAACAAA TCCCGGCAGC CCCGTGAATG GGCTATGCCT 840
GCACCCAGTC CTCTCACTGT ACGTCAACAA AGCAAGAACA AAAAAGGCCC TCCATCCCCT 900
GGGTGTGGCA GCCGCTGTGG TGGTCTCACC CAAGCCCTCA CTGGATTTCT TAGCTGGCTG 960
CCAAGCTGCC ACTATCCCAC TGGGATGCTC GTGGTGAAAG GTGCCCACGG GGTGACAAGT 1020
GCTGGTTATT TCTTGGGAAG GACTGAAGAT AACGAGAGAA GTCTCTCTCC AGAGCACCAC 1080
TGTGTGTGCT CGCTGTCTTA GATATTGCAT TGTTTCACAG ATGAGGACAG GGAGGGGCTG 1140
CAGGAGGTTC AAGGCTGTAT ACCACGGGGC TGGGCCAAGG GTCTTACCGG GCCGGGACAC 1200
TGCACTCTGT CACTGTTTAT AGGAAATAGA GATAGCTCCA TGTTATAAAC ATGGGAGTAA 1260
AAACTCGGAT GGGGGTAGGG TGGGGCTGGA GAGATGGCTC AGTGGTTAAG AGCACTGACT 1320
GCTCTTCTAG AGGTCCTGAG 1340