EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-00805

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr1:135060160-135061610

Target genes

Number: 8
Name	Ensembl ID

Lrrn2	ENSMUSG00000026443
Mdm4	ENSMUSG00000054387
Pik3c2b	ENSMUSG00000026447
Ppp1r15b	ENSMUSG00000046062
Plekha6	ENSMUSG00000041757
Etnk2	ENSMUSG00000070644
Sox13	ENSMUSG00000070643
Snrpe	ENSMUSG00000090553

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HNF4G	MA0484.1	chr1:135061306-135061321	ATGGGGCAAAGTCCA	+	6.02
Hnf4a	MA0114.3	chr1:135061307-135061323	TGGGGCAAAGTCCAGG	+	6.53
Nr5a2	MA0505.1	chr1:135061370-135061385	GGTGGCCTTGAGCCT	-	6.08
TFAP2B(var.2)	MA0812.1	chr1:135061586-135061597	AGCCTCAGGCT	+	6.02

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_07221

chr1:135058201-135062125

Intestine

Enhancer Sequence

CCTTTTCCTT CTCCTTTCCT TTTTCTTTTT CTGGCACATG TTGGGAAGAA TGAGTTGGAA 60
GTCCCTGAAG GCGATTGGAT TCTGAAAACC TCTGCAGTCA TGGCGGGCTT CTTGGAGAAG 120
GTGCCGGGGA GGTAAGATGA GGACTAGCTG AACTAGTTAG GTTGGCAACT TGGCTTAAGG 180
GCCTCCTAGA TCCCGGGCTG CGCTTGGCCG CGCCACCCTT CCCGCGTTCG ACCTTTGTTC 240
CTGCACTAAC CTCCCATCAA CCGAAGTGGT GTTATCACTT CCCCCTTTCT GCGCCGTGCG 300
TGACTCAAGG CTCGCCCTCG GCGCCTGCTT CCCTGGCCGC GCGCGGTTGC GGGCGCATCC 360
CGAGGCTGGG AAGTGTCCTC GGCAGCGCAG CCAGGCCCCG CCTCTAGGGC CCGCAGCTCA 420
AGAGCAGGCT CGGAGCGGCG AGCCGGGGCG CACCTCGGCG CAACCTGCGG GCTCCGGGGG 480
AGCCTCTCCC CGCCGCGCCG GCTGGCGGGA GCGGACTGAG GCCGGCGCTG CCCGTTAGCA 540
GCCGCGACGG CAGGAGCCTC CTAATTACTC ACCACGCTAA TTGCCCAGCA CTGAACTTCA 600
GGAGCCGGTC CGAAGAGGAG CTCCGGGGCG CAGAGAGGGC GGAAGGTGTC TAGGACCGAA 660
CCCCGCCTGG GTTAAGTGCC CGCCCGTCCC CGGCTGGCAG CCAGCTCGCC TTCAGCGGGA 720
GGCCGGAGTC ACCGCCGGGG GAACCGGGAG GTGCGCCCGG ACCACACCGG ACCCCCTCCC 780
CCATCGCCGC CTCTAGGAGG CGCAGAAAGT GGGGGGCGCC AGCTTGGCGC GGGGGGCGGG 840
CGCGGAGAAC CAGAGGGGCT GCGGGGACAC CGAGATGGCC GATGAGATCG ACTGGCTGGA 900
CCTGCCAGGC CGATGGACCT ACGGAGTGGA CCGCGGCGGG AGAATCTTCT TCATCAAGTA 960
TGTAGAACTC GTTCTCCCCC ATCCAATCCC CCACCCCCAC CCCGTTTCCA CATTTTCTTT 1020
AAAGTTGTCT GACTTGAAAG GTAGCAGGGC CGGGGGTCAG GCTGGGGTTG GTGGTGGAGG 1080
GAGAGGGTGG CTGACTAATA AGTTTATCAA GATACCTGTT TGAATGTGAC TCCCGCCTTT 1140
TCCTCAATGG GGCAAAGTCC AGGAAGGCTC CCAGACGTCC TTCCCAGAGC TGGAGAGGCA 1200
GGGCAGGCGA GGTGGCCTTG AGCCTCTTTC CTGACCACCG CACCCTGCAG CAAGGAGTTC 1260
TTCCAGCTCT TACATTAACC GAGGCCAGGC GACTTCTTTC CTCCAGACTT GGGCAGACTG 1320
ACAGCGTGTT AGGAGCCCCT GCCTCTCCCA CCTGCTCACT GCGGACTCCT GCAGCTCCTC 1380
CCCCTGCCTG CTGCTTCCCC GGGTCTGTGG TCAGGAGGCA GAAGAAAGCC TCAGGCTTGA 1440
AGAATCCTTT 1450