EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM085-18833

Organism

Mus musculus

Tissue/cell

Kidney

Coordinate

chr3:88301180-88302200

Target genes

Number: 22
Name	Ensembl ID

Apoa1bp	ENSMUSG00000028070
1700113A16Rik	ENSMUSG00000086082
Rhbg	ENSMUSG00000001417
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Bglap	ENSMUSG00000074489
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
2810403A07Rik	ENSMUSG00000028060
Rit1	ENSMUSG00000028057
5830417I10Rik	ENSMUSG00000078684

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF4	MA0039.3	chr3:88301668-88301679	GCAGGGTGTGG	-	6.62
NR2C2	MA0504.1	chr3:88301654-88301669	TGACCTTTCACCCCG	-	7.06
Nr2f6	MA0677.1	chr3:88301654-88301668	TGACCTTTCACCCC	-	6.42
RXRB	MA0855.1	chr3:88301654-88301668	TGACCTTTCACCCC	-	6.99
RXRG	MA0856.1	chr3:88301654-88301668	TGACCTTTCACCCC	-	6.79
Rxra	MA0512.2	chr3:88301654-88301668	TGACCTTTCACCCC	-	6.91

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_00960	chr3:88298868-88305281	Myotubes
mSE_01438	chr3:88250596-88336770	Th_Cells
mSE_09381	chr3:88301281-88302257	MEF

Enhancer Sequence

AAACTCAGAA ATCCACCTGT CTCTGCCTCC CAAATGCTGG GATTAAAGGC AGGCTTTTCT 60
GTTTCCCTTG GGCTCCTTAA GTACTCCTCA GCCCCCGGGT GTAGCTGCAC TGGCTTCTTT 120
CCTTCTATTA GGAATGTGAA TGGGGTCACC TAGGGCCTGG TACCCTTAAA GACCCTGTCT 180
CTATTGACAT AACAGTTCTG CCCAAGGGCA CAGCCTCCTT CCAATCTAGG TAGCCGATTC 240
CTACCCCAGG TCTTGAGACT GAAGGCACAA TCTCCACACT CCCAAGTTAC TGTTCAATGA 300
TGTATATATA GCCTAGCAGG GCTCTGGGTC TTTCCAGGTA CCGATGGAGG CAAATGTGTC 360
ATTGGCCTCA GAATCTCTAG GCAGCAGAAG TGAGCCTTGG CTAGATTTCC AACCTGTCTT 420
TCATGCTAGA GAAAGTTTAA TAGAGTAGCC ACCAGAAGTC AGAAGCTCAT GTCCTGACCT 480
TTCACCCCGC AGGGTGTGGG ACAAACCTCT GCCTTCCGTA GCCTGTGCTG CTTCTGTGAT 540
GACTTCAGCC TGCAGCCCCC TGCTTCTCTG CACTGGAGTC TCAGAAGTCC GCTAATGCAG 600
GGGACAATGG AGCACAAAGG TCTTGGGGGG AAAGGTGCTA CTGCATTGTG GGTCAGGAAT 660
TGTCCCCACT TCTGATCAGC CTCACTCCAA CAGTTTCTCA TGGAAGCACA CTCTGGTCAC 720
ACTCTGGGTC TCCATATAGC CAGGGTTAGC CTAGAATTCA CCATACTCCT CCTGCCTCAG 780
CCTCTTAAGC TCTGGGAATT ACAAGCTTGT GCTGCCAAAG CTAACTGGTA CTAGAAACTG 840
AACATCAGGC CCAATCATGC TAGATGAGTG CTCTACAACT GAACCTTAGC TACAGCCCAG 900
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATGTA TGTGTGTCTG 960
TATGTGTGTG CTTGTGTGTG TATGTGTGTG TGTGGTGTGT CTCTGTATGT GTGTGCTTGT 1020