EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM085-18829

Organism

Mus musculus

Tissue/cell

Kidney

Coordinate

chr3:88275100-88275600

Target genes

Number: 24
Name	Ensembl ID

Apoa1bp	ENSMUSG00000028070
1700113A16Rik	ENSMUSG00000086082
Rhbg	ENSMUSG00000001417
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Bglap	ENSMUSG00000074489
Bglap2	ENSMUSG00000074486
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Rab25	ENSMUSG00000008601
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
RP23	ENSMUSG00000093390
2810403A07Rik	ENSMUSG00000028060
Rit1	ENSMUSG00000028057

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HNF1A	MA0046.2	chr3:88275242-88275257	AGTTAATGATTACCA	+	6.21
HNF1B	MA0153.2	chr3:88275243-88275256	GTTAATGATTACC	+	6.03

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_01438

chr3:88250596-88336770

Th_Cells

Enhancer Sequence

CGTTAATTTG TTTTTCTCAA TCTATAGAAC CTATCTTCGT GGACCTCACA AAGAGTTCGC 60
TGTCGTCATG CCTGGTTTGT GTTTAGCTCA CTTTGTTTTT TTTAAAGCTA TTTAGGAATG 120
CTTTGTTGTG AACTCGGGAT TGAGTTAATG ATTACCAGAA TAAGGCTTTA AACCAAATTG 180
TGCGGTGCTA ATTTAAGTAG GCCTAAAATA AACCACTTGG GGTCAGACTC CAGATCTTGA 240
ACCAACACCC ATTATTTAGT CATGTTGAAC CTAACTACCC TCTTGCCTCC CTTCAGTTGT 300
TACGAGGTTG GATGTGGGGG TCAAAGAGAC CTCTGTGGCT TCCAGCCTCA GCACTCAGGA 360
AGTTGCCAGG CGTGGTGGCT CGTCCCTGTA ATCCTAATAA GTGGGAGGCA GAGGCAGAGG 420
CAGATGGATC TCTGTGAGCT CAAGGCTAGC CTGGTCTATA TAACAAGATC AGGTTAACAT 480
GGGCTGCAAA GTGAGACCTT 500