EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM084-16714

Organism

Mus musculus

Tissue/cell

IPSC

Coordinate

chr9:21649550-21649880

Target genes

Number: 18
Name	Ensembl ID

Tmed1	ENSMUSG00000032180
Yipf2	ENSMUSG00000032182
Smarca4	ENSMUSG00000032187
Ldlr	ENSMUSG00000032193
Spc24	ENSMUSG00000074476
Kank2	ENSMUSG00000032194
Gm6484	ENSMUSG00000047822
Dock6	ENSMUSG00000032198
Rab3d	ENSMUSG00000019066
Tmem205	ENSMUSG00000040883
Ccdc159	ENSMUSG00000006241
BC018242	ENSMUSG00000040563
Epor	ENSMUSG00000006235
Rgl3	ENSMUSG00000040146
Ccdc151	ENSMUSG00000039632
Prkcsh	ENSMUSG00000003402
Zfp653	ENSMUSG00000038895
Anln	ENSMUSG00000036777

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RARA(var.2)	MA0730.1	chr9:21649852-21649869	TGACCCCTCAGTGACCC	-	6.58
RARA(var.2)	MA0730.1	chr9:21649812-21649829	TGACCCCTCAATGACCC	-	6.72
Rarb(var.2)	MA0858.1	chr9:21649812-21649829	TGACCCCTCAATGACCC	-	6.01
Rarb(var.2)	MA0858.1	chr9:21649852-21649869	TGACCCCTCAGTGACCC	-	6.01

Enhancer Sequence

AACAAATGAT TATTGGCATA CAGTAAGTGT TCAGTAAATG CTGACTGAGG AGATATAAGC 60
ATTAGTAATT CTGCTGTGCC TCAGTTTCTC TGCCTGTGAA GAGGGATAAT GGTTGTGGCC 120
CCACTCACAG GATGAAAGGA GCACAAGCCG GCAGTATACA CTAAGCACTC AATAAATGTG 180
CATGATTGTG ACCCTTTCCA CTCCTGAACA GGGCTTACTT TACTCAGTGG GGTCAAGGCT 240
GAGCAGGCCA CTTTCCTGAG TCTGACCCCT CAATGACCCC AGTCGGCCAG CAGCCCTGAG 300
TCTGACCCCT CAGTGACCCC AGTCGATGAC 330