EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM084-10508

Organism

Mus musculus

Tissue/cell

IPSC

Coordinate

chr3:88290850-88292190

Target genes

Number: 20
Name	Ensembl ID

1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Bglap	ENSMUSG00000074489
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Rab25	ENSMUSG00000008601
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Gm10704	ENSMUSG00000074479
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
Rit1	ENSMUSG00000028057
5830417I10Rik	ENSMUSG00000078684

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr3:88291966-88291978	AAACAAACAAAC	-	6.32
IRF1	MA0050.2	chr3:88291196-88291217	AAAAAAAAAGTGAAAAAACAA	-	6.12
SOX10	MA0442.2	chr3:88291210-88291221	AAAACAAAGAA	+	6.62

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_01438	chr3:88250596-88336770	Th_Cells
mSE_09381	chr3:88291949-88295712	MEF
mSE_10397	chr3:88291985-88293293	Embryonic_stem_cells

Enhancer Sequence

TCAAGCTGAG AGGGAGAAAG CCAAGTTCAT GGAGAGGTGG GAGGGGGTTC AGGAAATGCC 60
AAAGGAGAGG TGATGGCTGT CCCCATCTAG AGGCAGGGTC TAGAGGCAGG GAAGGCCTTC 120
AGTGCCCACG GGGGGAAGAA AGGACACCCA CATTCTACCC ATGGCACTAA GAAATCAAGG 180
GTGAGGGCCT GTAAGATGGC CCAGCAGGTG AGGGCGCATG CCATTAGGCC CGGACAACCT 240
GAGCTCCATC CTTAGAGCCT ACATGGCAGA AGGAGAGGAC AGGTTCCTGC AAGTTGTCCC 300
CTGGTCTTAA CATGTGTGCT GGGGCATGTC AGGGGCCCAC AAAAGAAAAA AAAAAGTGAA 360
AAAACAAAGA ATTTAAAATT AATAGTAAAT TCCCCTGTGC AGGATCTCCC TCTCTTGGAG 420
CAGCAGTTAC TATGAAGGAG GTCCACATAG ACTGCAGCAG GAGCAGGAAG ATGGGAACAA 480
AGCATGGGGG TGGGGGTGGG AAGACCTGGG AAGGGCATGT GAGTGGAGGC TGGGAAGGGA 540
CATGAGTGGC TGCAGTGGCA GGTCAGGTAC AGACATCATC CTTAACTGTC AGGAAGACAG 600
GTCTTGCTGG AGCTGAAGTG CTGCTGGGGT GTGGTGTGCA GGAGGAGGGA GTAGGACCCG 660
CAGGCAAGGG TTAGACCAGG AGGAGAGACC CTTAACTGCC CTGGAGAATG GTTTCCAGGG 720
GAAGCACCAA GCTAAGGTGT TCATCTTGGG CAACTGCAGG CCTGGAAGAG CTGGGGAGGG 780
AGGAGAGCAG GGAACTGTGT CCCTAACTTC TTCACTCCTG AGCAGCATGA GAGAGCAGAG 840
TTGCAGAGAG GAGAGCTTGG AAAGTAGCGG ACACTGCACA CACAGGCAGC ACACCTAGGT 900
ATAATTAGCT ATCAGCACTC TGTTATGGGG GCTGGAGAGA TGGCTCAGTG GTTAAGAGCA 960
TTGACTGCTC TTCCTCAAGG TCCTGAGTTC AATTCCCATC AACCACATGG TGGCTCACAA 1020
TCATCTGTAA TGGGGATCTG ATGTCCTCTT CTGGTGTGTC TGAAGACAGC TACAGTGTAC 1080
TCATATACAT AAAATAAATA AATCTTTTTA AAAACAAAAC AAACAAACAA AAAAAACCCA 1140
ACTCTGTTAT GGCCTCAGTG GACAGCTCTC CTCTGAAGTG CTTGGAGCTG TCTAGGGAGA 1200
CAGGAGGAGG GGAACCAGAA CTGGGCTGTG GGTTGCTTTA GGATGAGCAG TGTTCTAGAC 1260
TGGAGAAGTG AAGGTGAGCA GGCAAATGGG ACCGAATGAT ATGTCGGACC AGGTGGGGTC 1320
ACTGGGGTCA CAGGACAGCG 1340