EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM076-09628

Organism

Mus musculus

Tissue/cell

Hindbrain_E11.5

Coordinate

chr17:25946330-25947460

Target genes

Number: 21
Name	Ensembl ID

Gng13	ENSMUSG00000025739
Chtf18	ENSMUSG00000019214
Rpusd1	ENSMUSG00000041199
Narfl	ENSMUSG00000002280
Haghl	ENSMUSG00000061046
Ccdc78	ENSMUSG00000071202
Fam173a	ENSMUSG00000057411
Metrn	ENSMUSG00000002274
Fbxl16	ENSMUSG00000025738
Wdr24	ENSMUSG00000025737
Jmjd8	ENSMUSG00000025736
Stub1	ENSMUSG00000039615
Rhbdl1	ENSMUSG00000025735
RP23	ENSMUSG00000093593
Rhot2	ENSMUSG00000025733
Gm10012	ENSMUSG00000057580
Rab40c	ENSMUSG00000025730
Pigq	ENSMUSG00000025728
Solh	ENSMUSG00000037326
Decr2	ENSMUSG00000036775
Gm8186	ENSMUSG00000049124

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZIC1	MA0696.1	chr17:25947280-25947294	CGCAGCAGGGGGGA	-	6.12
ZIC3	MA0697.1	chr17:25947279-25947294	TCGCAGCAGGGGGGA	-	6.34
ZNF263	MA0528.1	chr17:25947288-25947309	GGGGGAGGGGCGGGGGGGGGG	+	7.63

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_04142	chr17:25945103-25947285	Cortex
mSE_04142	chr17:25947302-25949082	Cortex
mSE_11027	chr17:25945985-25947424	Olfactory_bulb

Enhancer Sequence

GGTAAGGTGT GTGTGCGCGC GCGGCCAGGC TGCGGGGAGG GGAGGGTCCA GGTCGAGCCA 60
CTGCCTCCGC GAAGGCTACA ATGAGGAGGG GGCGGGGTGG GGACTTGGGA CTGCGCCGCG 120
GCCGCCGCCG CCTGAGCAGG GCTTACGTAA TCGCAGCCCC TTCCCCACCT CACCCTTCGG 180
CCGCTGAGCC AGCGGTTCCG CAGCCCCTAA CCCTAGTGGC CGGCCTGATT GCGCCCCGCT 240
CGCTACCGGC AGCGCGGTCA GGCTGTATCT CCGTACCACG GAATTGCTGA GAGGAAGCAC 300
GGTGGCTGCG AGGACGCGGA ACTGCAGGCC GTCAGCCCCC ACTCCTTCTG GCTTGGCTCT 360
GGGCTCTCCC CACTCCAGCC CTATGAGCCT CCGGCGGACT GGAGGACGTG ACAGGTGTTG 420
ATACAATTAA AAGGGAGGAG CCATGTGGAT ATGTGGCCTA GGGGTCCTGG ACGCCTTCTG 480
GACATGAGCT GGTATAGAGC TGCCGCCCAC AGCTCTATAC CAGGGAGTGG GCTGGCATGT 540
CTTTGGTTCT AGAAAAAGAA AATGGGCCTT GGCCAAGATT GGAAGGCTTC AAAATGGGGA 600
ATGGGCATCC TGAGATTGCT GAGCAGGGCT TCCATGTCCT TCTAGGATGT TAGTCAGTGG 660
GGGATCCTCC CCACCCGTCA TCCCAGGAGA GAAGGCTGCA CTGTTGAGGC CTGGATCTGG 720
CCTAGCAGCC CTCCTGCTAG CCCCTCCCAG CCCGAGCCAG CAGCTGACCT CCCAGGAGCA 780
GATGGCAGAT GCCACTTCAC CTGCTCCCTC CTGGAGGCCC GACTTCCACT GCCATCTTGT 840
CCCAGGGCCC ACTGACCAGG GTCTTCTCAG GCCTCCCTGC TGCCCCTTCG GGACACGGGA 900
CCCTCTGTTC CAGCCCAACA CTTTGATGAA GTGCTGGACA GCAGCCTCAT CGCAGCAGGG 960
GGGAGGGGCG GGGGGGGGGC CGGTGTTGGG ACAGGAGCCT GGATGATTAG GGGCTGCCTA 1020
GATCAGGTCA GAGGCATGGT GGAGCCTCGA TTTCCTGCCT AGACGTGGCC TGAGGGCCGG 1080
GCTGGGAGCC ATTGGGAGAA GAGAGGGAAA GTCAAGGTTG AAAACGTGGG 1130