EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM075-02739

Organism

Mus musculus

Tissue/cell

HFSC

Coordinate

chr3:88293650-88294680

Target genes

Number: 27
Name	Ensembl ID

Mef2d	ENSMUSG00000001419
Rhbg	ENSMUSG00000001417
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Gm6821	ENSMUSG00000078691
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Mir1905	ENSMUSG00000084728
Rab25	ENSMUSG00000008601
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Gm10704	ENSMUSG00000074479
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
2810403A07Rik	ENSMUSG00000028060
SCARNA15	ENSMUSG00000088604
SNORA42	ENSMUSG00000084433
Rit1	ENSMUSG00000028057
Gm17146	ENSMUSG00000091881
5830417I10Rik	ENSMUSG00000078684

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MEF2A	MA0052.3	chr3:88294099-88294111	GCTAAAAATAAA	+	6.04
Myog	MA0500.1	chr3:88294207-88294218	GACAGCTGCAG	+	6.62
Tcf12	MA0521.1	chr3:88294207-88294218	GACAGCTGCAG	+	6.14

dbSUPER

Number of super-enhancer constituents: 7
ID	Coordinate	Tissue/cell

mSE_01438	chr3:88250596-88336770	Th_Cells
mSE_05195	chr3:88292319-88294998	E14.5_Heart
mSE_05600	chr3:88292266-88295074	E14.5_Limb
mSE_06577	chr3:88294345-88295526	E14.5_Liver
mSE_06808	chr3:88292334-88295482	Heart
mSE_07384	chr3:88292474-88295252	Intestine
mSE_09381	chr3:88291949-88295712	MEF

Enhancer Sequence

TCTACCTCCA GCAGACCAGC GCTCGCTCGC TTGCTCGTGT CTGCATGCGC ATGATACATC 60
CCAAAATTAA AAAGGGAACT AGGTGAGCAA GTAAGGCAGG GGGGCCCACT TCAGGAAGAG 120
CAGCCCTGTC AACATGTTTG TCTTGCTACC AAGTCTCTAG GCAGTTATAG GCCTAGCAGT 180
CCACCTGCAG CAGTAGAGAA AAGGCTAGAC TTGGAAACTA AGGAGGTTTC AGAGAGTCTC 240
GTCCTCCTCC GTCCTCCACC TAGGTTGTAC TGGTCTGGGA GGACCACAGA GGGTCAGGGA 300
AGAGTGCAGA GGCCTGGAGG CTGCTCCCCA AGCTGTGTGT TGCTCCCTCC ACACCAAGAA 360
ACAAACGATT TAATGCCACG GTGTCTTTCT CCTGCAGAGG CCCTTCCAGA ACCAAAGACT 420
ATTTCTCCTC CTCCATCTTA GCACGAAAAG CTAAAAATAA AGTCAAACCC CAGCTCAGGT 480
TCTGGCTGCC ATCCGGCCCA GCCCTGGCTA GAAGCACAGC CCAACTTTCC ATGACTTCAG 540
AACTTTTCCG AAGCTGAGAC AGCTGCAGGG GAGGAAAGAA AATGAAGAAA AAAACACGGG 600
TGCAGGCAGC AAGTTGCAGA GACAGAATCC GAGCTCCTTG GGCCAGCTCC AAGGCTGGCA 660
GCGGCTTCCC AGATGGGCCT CTGTATCCTG AAGGCCAGCC GGCTGGGGTG CTGCTGGTGA 720
GCTCCGAGTC CTTCGACCTC CCCCTTTTAC AGATGAGGAA ACTGAGTCAC AGAGGATGGT 780
GCGTGGCCAA CATGGAGCAT GGCAGACAGC CACAGGGGCA GTGTCTAAGC TGACATTCTC 840
ACACTCTCCC CCGCCCCCCA CTGCCCTCCT AAGCTCTGTG GGTGGAGAGA CTGCAGAAAG 900
AAGCCAGGAG CAGGAGTGGA TCCCTTTCAA CAAACTCATC TCTGACTGAG CTGAGGATGC 960
TTAGCCTCGA GGACACCTCC TAGCCCTGAC TCCTTGGGCA CTAGAGGCGG AATTCCCAGG 1020
GTTCCCCTTG 1030