EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM075-00883

Organism

Mus musculus

Tissue/cell

HFSC

Coordinate

chr11:115947120-115948180

Target genes

Number: 27
Name	Ensembl ID

Caskin2	ENSMUSG00000034471
Tsen54	ENSMUSG00000020781
Llgl2	ENSMUSG00000020782
2210020M01Rik	ENSMUSG00000048442
1110017F19Rik	ENSMUSG00000075420
Sap30bp	ENSMUSG00000020755
Recql5	ENSMUSG00000020752
Gm11721	ENSMUSG00000087064
Itgb4	ENSMUSG00000020758
B230344G16Rik	ENSMUSG00000084827
Galk1	ENSMUSG00000020766
H3f3b	ENSMUSG00000016559
Unk	ENSMUSG00000020770
Unc13d	ENSMUSG00000057948
Wbp2	ENSMUSG00000034341
Trim47	ENSMUSG00000020773
Trim65	ENSMUSG00000054517
Mrpl38	ENSMUSG00000020775
SCARNA4	ENSMUSG00000088290
Fbf1	ENSMUSG00000020776
2310004N24Rik	ENSMUSG00000020778
Acox1	ENSMUSG00000020777
Cdk3	ENSMUSG00000092300
Evpl	ENSMUSG00000034282
Srp68	ENSMUSG00000020780
Exoc7	ENSMUSG00000020792
Gm11741	ENSMUSG00000081929

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr11:115948054-115948074	CCCCCCCACGCCCCCCCCCC	+	6.17
RREB1	MA0073.1	chr11:115947946-115947966	CCCCCACCCATCACCCCAGC	+	6.23
ZNF263	MA0528.1	chr11:115948037-115948058	TTTCTCCCTCTTTCCTCCCCC	-	6.43
ZNF740	MA0753.2	chr11:115948061-115948074	ACGCCCCCCCCCC	+	6.11
ZNF740	MA0753.2	chr11:115948050-115948063	CCTCCCCCCCCAC	+	6.87
ZNF740	MA0753.2	chr11:115948064-115948077	CCCCCCCCCCCAC	+	6.92

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

mSE_06418	chr11:115944839-115950453	E14.5_Liver
mSE_07675	chr11:115947266-115950449	Intestine
mSE_08020	chr11:115948035-115950446	Kidney
mSE_08527	chr11:115946855-115950461	Liver

Enhancer Sequence

GGGCAGCTCA GGTTAAAGAA GTGGTCACCA GGCACATGTG CTGGCCAGCC CCTTCCCAAG 60
ACCTACGCAC ACGAGGTCAG CAGAACCTGG CCTTGTCACT GCCACCTTCT CCTCTGAGTC 120
AGCTTCCCAG GTGACAAGTC CCAAGATGGG TGCCTGTCTA CACTGGGTGT GGGCTCTGAC 180
CTCCATCATG TCTCTCTTGG CTCTCAAGTT AATCCAAGCC CGGATAGTGC AAGTCAGGAG 240
AGTCAGAATT CCAAGGAACA AGAAACAAGA GGAACAGAGA AGCCCAGCAG TTCAAGGAGG 300
GGAGAGAAAA AAAGAATCTT AAAGTTGGGA GACCTTTGTT CGGGGAACTG ACACAAGCCA 360
TTAAGAATTC AAGAGAACCA GGCAAGAGAC AAGCCTTTAT AAGGGTCACC GGGTTAAGTA 420
GTTGACAGAC ATTTAGTTCC ACCACCTCTA GGGCCTCAGC CTTTCTTTTG GAACTTGAGA 480
AGTTCTGGAA TATACGAGAA AACTGTACAG GAGTAGTTAA GCCTATTGAC TTTGGGGCCA 540
AGTTACCTTC CTTCAATTCC CCTTCTGTTA CTCACAGCAC AATGGTCTAA GTTATTTTAA 600
CCTCATTAGG CGTCACTTGC CCTACCTGTA AAATGTGTCT AATAGTTTCT GCGGCACAGG 660
ATTATGTATT ACCTAAGGTA GAGCTGACGC AGCATAGTAA AGACGTAGTG AACGCCTAAT 720
AAATAGCAAC TATGTTTTAA GACTTCGTTT GGGAAGGGGT TCAAGAAATC ACCCGTGGGC 780
CTCACTCGGC TTCCCAAACA AACCCTGACA CCATTCTCTG GCCCCACCCC CACCCATCAC 840
CCCAGCTGAT CAGCACTCCG GCCCTCCCCA ACGACCCACC CACTCCCTCC AGCCCCGCCT 900
CCGGCCGTTA CCACCCCTTT CTCCCTCTTT CCTCCCCCCC CACGCCCCCC CCCCCACAGC 960
GCTCCATCAA TTTCCTTCTC CACCATATCC CACCGCCCAC CACACACAGT GGCCGACACC 1020
CGCCCTTCAA GTCTCCAGGA TCCTTCCGCC GTGTTTTCAC 1060