EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM063-03111

Organism

Mus musculus

Tissue/cell

Forelimb_E13

Coordinate

chr9:66439420-66440590

Target genes

Number: 8
Name	Ensembl ID

Herc1	ENSMUSG00000038664
Fbxl22	ENSMUSG00000050503
Gm15563	ENSMUSG00000086387
Usp3	ENSMUSG00000032376
Aph1b	ENSMUSG00000032375
Ppp1r2	ENSMUSG00000059237
Rab8b	ENSMUSG00000036943
Rps27l	ENSMUSG00000036781

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ELF3	MA0640.1	chr9:66439719-66439732	TACCAGGAAGTAA	+	6.17
ELF5	MA0136.2	chr9:66439720-66439731	ACCAGGAAGTA	+	6.02
RREB1	MA0073.1	chr9:66439954-66439974	ACCCAAAACACCCAACCTCG	+	6.76

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_03004	chr9:66437678-66490684	TACs
mSE_08709	chr9:66438863-66443153	Liver

Enhancer Sequence

TCTATTCCTT ATCCTGGAGG ACAGTTTTCC TTGTGTTACC CCGTATATTT TGCTTCAAGA 60
ATATAATCCC CTTTGAAGAA GTAGTACGTC AAAAGTATTA AAGCAGTCCC TAAACTACCT 120
TCCTAGCTCC AATCCAACCC AGGCTGAAAG ACCACTCTGC TGAATCGTCC CACCGTCTTT 180
TCAGCCTTGC AGATGAACTT GATTTCTGAT GCACACGATT CACATTTTAC ACTACAGCCC 240
AAGCTGCCAG TGATAATCTT AAAGCTCATA AACAAAGACC AGCGTCGGCA CCAGGGCCCT 300
ACCAGGAAGT AATCAAAGCC GGGTGGCCCG TCCGACCTTA AGTCCCGGCA GACAATGAGA 360
GGGCACCGGG GCTTCCAAGG AAGCAGAAGG AGTTAACGCT TAAGCAACTC GAAGGCATAA 420
CATAAACCTA CGAAGTGTCT TACACGCACT CGGGAATTCC CAACGAAATC CCTGCCAACC 480
CGAAAAACTG CCTCGGAACA ATCTTCGAAA GGCAAAACAA AAAAAAACAA AAAAACCCAA 540
AACACCCAAC CTCGAGCCGC CCCTCCAAAG CAGCTGTTGG CTGCCTTCTC CGGAGCTTTC 600
GGAGCCCGCA GCCTGTTTTC AAACTTCACC CTCACAGGCT GAAGAGAGAC TCCGAGGTGA 660
GCAGCCCCCA GCGCAGTCCG CTCAGGGGCT GCGGGGGAGG CAGGAGCCTG TGGGAACCCG 720
AGGAAACGCA ACCCAAAGGG GCTCGCGCGC CGGCAGTCCA GACAAAGCTG CGCCCGCAGA 780
GCGGCGCTTT GCCTGTCCGG CCCACGGGGG ACCGCGAGCC CGACCCCGCC ACACGTGCGG 840
CCGCGCGCGG AGCCGGCCCT TAGGTTCGCG GAGCCTTGGG GTGCGAGCCG CCGCGTCATC 900
CCGCCGCTGC GCGCTCGCCT CAGGCCCCCG CGGGCCTCTC CTCAGCCGGC CCGGCCGTCG 960
GGCCGCGCGA AACAAAGGAG CCGCCACCGC GCCCGCCGCG CCGCGCCGCG TCCCCTCGCC 1020
CCGCGCGCCG GGCCCGCTTG CTCCCCTCAG CCTCCCCCCC CCCCCAACGA GGCCGCGCGC 1080
TGCCCCGCAC CCGCGGCCCT TCGACGGCAA GGCCCGGGCC AGAGCCGGGA CCTCGGGTGC 1140
GCGGCCGGCC AGCCCCAGAG CCGCACTCAC 1170