EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-12449

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr9:21650010-21650200

Target genes

Number: 18
Name	Ensembl ID

Tmed1	ENSMUSG00000032180
Yipf2	ENSMUSG00000032182
Smarca4	ENSMUSG00000032187
Ldlr	ENSMUSG00000032193
Spc24	ENSMUSG00000074476
Kank2	ENSMUSG00000032194
Gm6484	ENSMUSG00000047822
Dock6	ENSMUSG00000032198
Rab3d	ENSMUSG00000019066
Tmem205	ENSMUSG00000040883
Ccdc159	ENSMUSG00000006241
BC018242	ENSMUSG00000040563
2310047B19Rik	ENSMUSG00000051238
Epor	ENSMUSG00000006235
Rgl3	ENSMUSG00000040146
Ccdc151	ENSMUSG00000039632
Prkcsh	ENSMUSG00000003402
Rpl15	ENSMUSG00000061167

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RUNX1	MA0002.2	chr9:21650137-21650148	AAACCACAAAC	-	6.02
SP1	MA0079.4	chr9:21650027-21650042	GGTGGGCGGGGCTAA	-	6.86
SP2	MA0516.2	chr9:21650026-21650043	AGGTGGGCGGGGCTAAG	-	8.17
SP4	MA0685.1	chr9:21650025-21650042	AAGGTGGGCGGGGCTAA	-	7.21

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_07116	chr9:21650000-21653643	Heart
mSE_09349	chr9:21650064-21653653	Lung
mSE_10544	chr9:21650057-21653665	Embryonic_stem_cells

Enhancer Sequence

CTGGTACCTA GCAGGAAGGT GGGCGGGGCT AAGCGGGAGG CGGGGCTGGG GACTGTGGTG 60
AGCCAACAGT GACACCTACC TTTAACTAAT GAAATCCAGC TGCTCAAGGA AGGAAGAGTG 120
GGTGGATAAA CCACAAACAG TGCAGCCCTT CGACCCTCCT TCCCCTCCCA TGAGCTGCTC 180
CAGGTAAGAC 190