EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-08858

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr4:129240690-129241270

Target genes

Number: 15
Name	Ensembl ID

Rbbp4	ENSMUSG00000057236
Bsdc1	ENSMUSG00000040859
Marcksl1	ENSMUSG00000047945
Hdac1	ENSMUSG00000028800
Lck	ENSMUSG00000000409
Fam167b	ENSMUSG00000050493
Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Dcdc2b	ENSMUSG00000078552
Iqcc	ENSMUSG00000040795
Ccdc28b	ENSMUSG00000028795
Txlna	ENSMUSG00000053841
Kpna6	ENSMUSG00000003731
Tmem39b	ENSMUSG00000053730
Khdrbs1	ENSMUSG00000028790

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Nr5a2	MA0505.1	chr4:129240709-129240724	TCTGACCTTGATCTC	-	6.16
RORA	MA0071.1	chr4:129240711-129240721	TGACCTTGAT	-	6.02

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_01470

chr4:129233446-129262849

Th_Cells

Enhancer Sequence

CTTGCCACCT AACCGAGGAT CTGACCTTGA TCTCTGGGAC ATGGTATCGA GAGAGTCCTA 60
ATGCCTACCA TTTGTCCTCT GGCCTCCACA CATACACTAT GACATATGCA CACAGATTTT 120
AAAAGAGCAG ACAGTGGCTG GGGTGACATC TCAGTTAGGA AAGTGTTTGT AGCACAGCAT 180
GGGGACCTGA GTCCTGTGTT CCCATGTGGA AGGCCTGGCG AGATGGTGTC ATTTGGAAGC 240
TCACCGGCCA GACAAAAGCA GACAGAGCAA CAGATGAAGA GACCCTGCCT TGAAACTCAA 300
GGTGGACAGC TCCCTAAGAA TGACACTTTG TCTGGGCGTG GTGGCGCCTG TCCTTAACCC 360
CAGCACTCAG GAGACAGAGG CAGATGGATC TCTGTGAATT TGAGGCCAGC TGCCTGGTCT 420
CCTACAGTGA GTTCCTGGAC AGCCAGAGCT ACACAGTGAG ATCCTGTTTC AATAAAAGGA 480
AAGAAAAAAC CCATGGCGCC TGACCTCTGG CCTCCACACC CATAAACATT CCGAAGCGTC 540
TGCTTACACA TGTGTACACA GCGAACAGAC GCGTACACAG 580