EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-06427

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr19:47375090-47377810

Target genes

Number: 6
Name	Ensembl ID

Pcgf6	ENSMUSG00000025050
Taf5	ENSMUSG00000025049
Pdcd11	ENSMUSG00000025047
Neurl1a	ENSMUSG00000006435
Sh3pxd2a	ENSMUSG00000053617
Slk	ENSMUSG00000025060

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Nkx2-5(var.2)	MA0503.1	chr19:47377725-47377736	AGCCACTCAAG	+	6.62
RARA	MA0729.1	chr19:47377013-47377031	GAGGTCAGTGGGTCAAGC	+	6.38
RFX2	MA0600.2	chr19:47376115-47376131	GGTCTCCATGGCAACT	+	6.11
RFX2	MA0600.2	chr19:47376115-47376131	GGTCTCCATGGCAACT	-	6.23
RFX3	MA0798.1	chr19:47376115-47376131	GGTCTCCATGGCAACT	-	6.47
RFX3	MA0798.1	chr19:47376115-47376131	GGTCTCCATGGCAACT	+	6
RFX4	MA0799.1	chr19:47376115-47376131	GGTCTCCATGGCAACT	-	6.05
RFX4	MA0799.1	chr19:47376115-47376131	GGTCTCCATGGCAACT	+	6.21
ZNF263	MA0528.1	chr19:47376273-47376294	CCATCCTCTCCCTCTTCCTTT	-	6.2

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_05639

chr19:47375212-47377243

E14.5_Limb

Enhancer Sequence

CAGGGCAGTC TGGACAGAGG TCTGAAGTGT TTCCCTTGGT TGTGTCAATG TCAAGAGTTT 60
TGACCCACAG TAAGCAGAGG CCCTCTGGAT TTAAGGAGTT AAGTTTGTAT TTGCCTATTC 120
ATTGAGGCCT AGGACAGTGC TGGGCCCTGG AAGCAGGAGA GAGTAAATAT TTATAAGGGA 180
GCCAGCGAGG CAGGACGACC CCTGGATGCT AAGTTTCCTT ATGCAAAGCC CAGATGATGA 240
GCTAAACTCC CTTGCTCTTT TCAAAGACGG CTAGTTACAA TCCCACTTTG GCAACAAGGT 300
CCACACAGCC TGGGTACCAT GGCTGCCATT CTAATGCCTA GGAGTGGGTC AGTCTATCTG 360
AGGCGTGCCT GTGAAGCACC AGTTGAGGTG AGGGGAAAGG ATGAGAAGTC GCTCCCACCC 420
CTGGGTCTAG GCTAGACCCC AACATCCCAG TGTTGTATTC TTCTTTGAGA CAGCCATCTG 480
ACCTCCCTCA TCACATACTG TGAAAGTATA AGGCACGTGT GCAGAAAATG CCTGGATACT 540
TGGATGGTGA GTGTGTCGGT GGAGAGGACA TCCCAGGAAG ATAGGAAGAC TCTGGGAAAG 600
TGGGATTCCC CAGTTCACCT CAAAGAGGAA TGGGGAAGGC AAATTGCTCG GGGCAGTTCC 660
CAAGCGCAGC ACCAATGGAG CTCGGTGGAG CTCTCCAAAG CTGGGCCTGT GAGAAGACTC 720
CCTGGCTTGG ATTCTGGCCT CTTTAAGGCC CAGCGCTATG GCTTCCACAG ATCTTGTTTA 780
AACTTGAGAG GGTGGGGGAG GGGCCAAGGG AAACTACATT CTTCCCCACC GAAGCCAAGA 840
GTCTAAAGTA ACACTTCTGG TTGTGAGTGA TGGCAGTCTG TTTGTGATTA TGGCCCTGGC 900
TTTCTGGCAG GGCAGCCCTG GAACCCCACA GTCTTGCTGA CGGGAGGGAC ACTCTCCCTC 960
ACTTGGGTAA TCTTGTCCTC ATCTGACATG ACCAAAGACA TTCATCAGCC CCTCTGCTTC 1020
CAACAGGTCT CCATGGCAAC TCCTCAAAAA CACTATTTAA AGAGGGGGGG AAAGCCACCC 1080
CAAAACCCTA TCGTGAAATT CTTTCTGTTC CAGGCACGTC CTAAAGAACC CAAGAAGCAT 1140
CAGCATGGGC TGATGTCATC TGCAGGAGGG AGGGGACGCC GGACCATCCT CTCCCTCTTC 1200
CTTTCATCAG GGAGAACAAT GCATGCACAC ATGGATGCCC CTTTGCTGCC ACAGTCTGAG 1260
GCGGCTCGGG GAAGCTCAGC TGTGCTCTCT CCCGGAAATT TAATCTGCGA AGCATTTGGC 1320
CTCGAAAACT CAATTCCAAA GGTGTCCGGG AGCCCACCAA CCCTGTGATC ATTGTTACAA 1380
ATCCAGGGCT GCAAGAGTCC GACCCGTTTG GCAGCTGGGG AGAGCTGGCT GGGGGATGGG 1440
CAACATGGCC ACTGTCCCCT CCCCTGTGCC TCCTGTGTGG AGAGAGACTG TATGTTTATA 1500
CAGGCCCAGC GGCGGTGGGG AGGTAGCATA ACTCTCTAAG ATCTCCACAC CGTGGGACAG 1560
AGAGGCTACT TCTGGCTCGG TTGATAAAAG TGCAGTGGTT AGGGAATAGG AGAGCGTCAG 1620
ATCCAAGAAG CAACTGTGGG CACGGCTGTC ACCCCTCTGC CAAGGGCAGA CAAGGGCAGC 1680
TGGCGTGCGA AGGGACAAAG TAGCTTGAGG TAACCCATTA ACTGGTAGCT GAGCTTAGAG 1740
CGCAGATTGA CCAAGAACAC CTTATGCAAA GCCTGGCTTC CTTCCAGAAC GGCTCTACCA 1800
CTCTGCCACT CTGCCCATTA ATATGACACC CCGAGTGGTG TGCCAAGTGG CAATCCCTTG 1860
ACCCAGTGCC TCGGGCAACA AGTGGGAGTC TGGAGCTGGC AGCGAGCACC ACTGGGCTAG 1920
AGAGAGGTCA GTGGGTCAAG CCGGCCATGG TAGGAGCCCG TGCTTATGCT GTAGGTGCCG 1980
GCTGGTACAG GGACCTAAGG CCCTGCCATC TTGCCACACT TGGCTGCTAT CTGTCTCCTC 2040
CCAACAAACC GGCTCAAACC AGCCGACAAC TCAAATACGT GAGCACGAAG AAGACTTCAA 2100
GCCACGGGCA GGCTGGGGCC CTGGGAGAAC AGGAAACAAA TGAGAAAGAC AGAGTGACCT 2160
GGGAGCGCCA GGCCTGGGTG CCTAGCCAAC CGCAACAGAG CCCTTCTTGA GATGAGGCTG 2220
CAGGGGCCGA GCCTGGGGTC TGACGGGGAC TCAGCCAGCC ATGGGCAGTA CTGCATCCTC 2280
TGGAGGACAC CAGCTTGTCC CCAGCTTTAC TCTAGAGCCT AGGAAGACAA GCAAGCCTGC 2340
ATTCTCTGGC TGTGTTTGCC AGACATGTTA GGAGAATGAG TCTCTAAATA CAGGGCTGGG 2400
GAAGTGAGTC TAAAATCTAG CCTCAGCCAC AGCCTAAAGG GCCCGGTTGG GAGCAGTGGT 2460
TTTGTAGGTA GAGTGGCTGG AGAGTCCTGC TCCCATTCAC TGATACCTGT TACATTATTT 2520
CTACGACCTT AGAAGCTGAC TCCCCAGCCC ACCGCCTTCC CTCTGCACGG CAGGGAATAA 2580
CTGCTTTTGA TACCACACAG TAGGTCCTTT CAGTCTACTT ACTGCAGCTG AACTCAGCCA 2640
CTCAAGGGTA ACCTCCTCCC TTTAGCCAGA TCTCATCAGT CCCTTCCACC TATTCACCCT 2700
GTGGGCAACG CCTGACTTCT 2720