EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-06120

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr19:4214630-4215730

Target genes

Number: 17
Name	Ensembl ID

Ndufv1	ENSMUSG00000037916
Gstp1	ENSMUSG00000060803
Gstp2	ENSMUSG00000038155
Pitpnm1	ENSMUSG00000024851
Aip	ENSMUSG00000024847
Cabp4	ENSMUSG00000024842
Coro1b	ENSMUSG00000024835
Carns1	ENSMUSG00000075289
Tbc1d10c	ENSMUSG00000040247
Ppp1ca	ENSMUSG00000040385
Rad9	ENSMUSG00000024824
Clcf1	ENSMUSG00000040663
Pold4	ENSMUSG00000024854
Ssh3	ENSMUSG00000034616
Ankrd13d	ENSMUSG00000005986
Kdm2a	ENSMUSG00000054611
Pcx	ENSMUSG00000024892

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr19:4215467-4215478	GGGGGCGGGGC	-	6.02
KLF5	MA0599.1	chr19:4215468-4215478	GGGGCGGGGC	-	6.02
SP3	MA0746.2	chr19:4215466-4215479	GGGGGGCGGGGCC	-	6.11
ZNF263	MA0528.1	chr19:4214898-4214919	AGAGGAAGAGGGAGGGAGAGA	+	6.52
ZNF740	MA0753.2	chr19:4214858-4214871	GTGGGGGGGGGGC	-	6.29

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_01389

chr19:4185126-4244466

Th_Cells

Enhancer Sequence

AGGTACGGCC GGGCGCCCTC GAGAGGGGCC GGGTGGGGAC GCGGCATTCC TGGAGTCCGC 60
TTGGCGGAGC CAGGAGGTGG CTGAGAACGC GGCGGGGAGC CTGGACAACC CTCAGACCTG 120
GACGGGCGGC CACCTGGAGC CGCGGCGAGG CGGGGTCCCA GGGAACCCGC GGACACAGAG 180
CCCCGCGCCA GAATCGGGGC GAGCGAGTCC GAGGCGGGCA GCGAGGGTGT GGGGGGGGGG 240
CCGCGGCGCA AGGGAGGAGG GGGCCAGGAG AGGAAGAGGG AGGGAGAGAG GCAGAGGGGG 300
AGCCCGCGGC CGAGCAGCGG GAAGCGAGGG GGAGGCCGAC ACCTCGGGCC GCGCTGAACT 360
CCTTCCTCGG CCCGCGGGGA GGGCAGGAGG GCGCGCGAGA GGAGGGCGGA GGGCAGAGCA 420
AACCTAGCTG GGCCGGGCCG GGCCGGGCCG GGCCGCCACG GGACTCCGGT TACTACGCTG 480
CGCGCGGCGT GGCCGGAGCC CTCCATGCTG CCCACCGCCT GGGAGCCAGA GGCAGGTAGG 540
CGCGGCGGGG TGGCCGGGGC CCCGAGCCCG CGGTGGCCTG GGAGTGATTA CTGCAGGAGG 600
GTGTTGTGGG GGAGACGCAG CCTGGCCGGA CCCAGCAGGA AAAAGTCCGT CAGCGGCCGG 660
GAGCGCCGAG ACTGCCGGCA GCCCCTCGAG CGGCTGCCTG GCTAGGCGGC CCGTGGCAGG 720
AGGGCGGGCC AGGCAGGGAG TGGACGCGCC GGAGCGGGCA GCGGCTCAGC CGAGCCCCGA 780
AGCCCAACGC CCGGACCCCG CCTCCGCCCC CGCCGCCGCC GGGAAGGGAG CGAACGGGGG 840
GGCGGGGCCG GGGGCGCCGG GGCCACACAA GGGGAAGGCG CCATCGCCGC CGGGAGGGGT 900
CCGAGATCGA GAGGTCACGG TCGAGAAGGT AGGGCCAGCG AACTGCCAAC TTCCACCGCC 960
CCAGTTCTTG GAGCTGATCC CCTCAAGCAA AGTCCGCGTA GCTTCTTCAA AGTCCCCACA 1020
CCCATGTTCT CACCTACCTT TCTATTACAC TGGGGTGCAG AAGGCTTTCC TCTAGGAGAC 1080
CCCCAATCTC CGTGTTCTCC 1100