EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-05821

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr18:37337520-37338880

Target genes

Number: 13
Name	Ensembl ID

Pcdhb3	ENSMUSG00000045498
Pcdhb4	ENSMUSG00000045689
Pcdhb5	ENSMUSG00000063687
Pcdhb6	ENSMUSG00000051678
Pcdhb7	ENSMUSG00000045062
Pcdhb8	ENSMUSG00000045876
Pcdhb10	ENSMUSG00000045657
Pcdhb14	ENSMUSG00000044043
Pcdhb18	ENSMUSG00000048347
Pcdhb19	ENSMUSG00000043313
Pcdhb20	ENSMUSG00000046191
Pcdhb21	ENSMUSG00000044022
Pcdhb22	ENSMUSG00000073591

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ESRRB	MA0141.3	chr18:37338598-37338609	AATGACCTTGA	-	6.32
Esrrg	MA0643.1	chr18:37338599-37338609	ATGACCTTGA	-	6.02
Foxd3	MA0041.1	chr18:37337774-37337786	GTTTGTTTGTTT	+	6.32
Gfi1b	MA0483.1	chr18:37338404-37338415	AGCTGTGATTT	-	6.14
RORA	MA0071.1	chr18:37338600-37338610	TGACCTTGAT	-	6.02

Enhancer Sequence

AGAAGCTGCA GGAAAATGAA GGATGTGGTT GGTTGGTCCC CAGGTGGTTG TAGTCTTTCT 60
TTTGTCTTTC TGATCCAGGA CAGGCCTCAG GTTTCAGACT CTTCCCGAGT TTTGAGTTTT 120
GCGAACTGTG ATGTAGGTTT GTGCAATTGA TCAGCAGCTG ACGGGCGGTG CTTCTCCAGT 180
CAGTCCACAA ACTCAAGAAA AGATGGAAGT AAGGAGGAGG GGATGTTTTC CATCTATAGC 240
CCGTTTTTTT GTCTGTTTGT TTGTTTTTGT TTTTTTCCAG CAGTTTGAGT GTAGATTTTG 300
TTGTTGTTGT TGTTTCTGTT TTTCCCTTTA GTCAAGCACG AGCATGTATA CAATTCTAAA 360
CTCAAGCTAA ATTCTGAAAA CAGTACTGGA GCAAGAGCCC ATTGCACTAA ACTAGAAGAC 420
ACAAAGGAAA TCAGGGCCGC CATAAAGAAT GCAGTGACTG TGTCTGTGGC GCGGGTGGCA 480
GAAGCAGCTA GAGAGAGGGA AAGGCAGGGT GGCACTGAGC ACAGAGCCTC TGGATACTCA 540
CATGCAAACC CCAGACGAGC CTTTGGTAAC CAGACTCTTC CCTCAGCCGC GGGGATCAGC 600
GGCAGCAGCA GCCCACCCCT GATCAGGAAC AGTTCAAGGG AGCTGGCTGG CTGGCTGGCT 660
GGGCCGGAAG CGCCTGTAAT CATTTAATAG CCTTTGCTGG GTGCACTGAC AGATCAGAGT 720
GGGCGGTAGG CAGGCTCCAA AGTGCTGTCT GGCAAGATAG TCCTCGGCTT TAATCACAAT 780
GATGGGTTTT CTGGAAGCTC TTTATTAACC TCGGCACTGA ATCCCAGAGA TGGTAACAAA 840
GGGATGAATG GGGAGACGGG GGAGGGCCTG AAACCTGGAG GCTGAGCTGT GATTTTCCTG 900
ACTCCTCACC CTCACATTCG CACCCCTCCC CCACCTTCGT TTCTTTCAGC AGATTCTAGC 960
TCAGAATCTG CAGCCCCTGC CTGCCTCTCT GCCTCTCTTG CATCTCTGCC TCTCCAAGAT 1020
GGAAACAAAA CTGATAGCCA TAACAACATC CGTACATGTA TTATATTTTA CATTATCAAA 1080
TGACCTTGAT ACACAGTTCA GAATGTGCCT CTGCAATCTG CCTAGATTCT AGTGCTAGGC 1140
CACACCGGTT AGTAATCATG TGTCCAAATT GGTCCTTAGG CCCTACATCT ACAAAACAGG 1200
TACACATGTT AGCAATGCCT ATTTCTTTTA GTTTTCATTG TCCCCCTTTT GTTTCTACAG 1260
TTCAGCATGG GGCTTTGGGG AAACATTTGC AGGGTTGGCA CAGACCGCAA CTTCTAAAGA 1320
CCCTCCCCTG GCTTTTGAGT CCCCAGTCAT TCTTAGTCCC 1360