EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM061-01026

Organism

Mus musculus

Tissue/cell

Forelimb_bud_embryo

Coordinate

chr10:79630660-79631770

Target genes

Number: 30
Name	Ensembl ID

Ptbp1	ENSMUSG00000006498
Med16	ENSMUSG00000013833
Kiss1r	ENSMUSG00000035773
C030046I01Rik	ENSMUSG00000035781
Arid3a	ENSMUSG00000019564
Wdr18	ENSMUSG00000035754
ORF61	ENSMUSG00000013858
Cnn2	ENSMUSG00000004665
Polr2e	ENSMUSG00000004667
Gpx4	ENSMUSG00000075706
Sbno2	ENSMUSG00000035673
Stk11	ENSMUSG00000003068
Atp5d	ENSMUSG00000003072
Dos	ENSMUSG00000035640
Midn	ENSMUSG00000035621
Cirbp	ENSMUSG00000045193
1600002K03Rik	ENSMUSG00000035595
Efna2	ENSMUSG00000003070
Ndufs7	ENSMUSG00000020153
Gamt	ENSMUSG00000020150
Dazap1	ENSMUSG00000069565
Rps15	ENSMUSG00000063457
Apc2	ENSMUSG00000020135
2310011J03Rik	ENSMUSG00000020133
Pcsk4	ENSMUSG00000020131
Reep6	ENSMUSG00000035504
Mex3d	ENSMUSG00000048696
Mbd3	ENSMUSG00000035478
Uqcr11	ENSMUSG00000020163
Tcf3	ENSMUSG00000020167

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF13	MA0657.1	chr10:79631279-79631297	ATACCACGCCCCTTTCGC	+	7.03
KLF14	MA0740.1	chr10:79631280-79631294	TACCACGCCCCTTT	+	6.48
KLF16	MA0741.1	chr10:79631023-79631034	GGGGGCGGGGC	-	6.02
KLF5	MA0599.1	chr10:79631024-79631034	GGGGCGGGGC	-	6.02

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

mSE_00454	chr10:79620816-79636056	pro-B_Cells
mSE_01215	chr10:79600012-79642628	Th_Cells
mSE_09402	chr10:79622804-79631603	MEF
mSE_11235	chr10:79620689-79631951	Placenta

Enhancer Sequence

GGTGAGGGCT CTGGCGGCAC CGGCTCTGAG GGGCCCGGGG CGGCGGGCGG CCTGTGACTC 60
TCGGGCGAGG CGGAGCCGCA GCGGCACGCC CCTGGGACTT GGGGGCGGGC CCGGGTTGGA 120
GTCCGCCCCG CCGGCGGCGA GGCGGGCAGC GGGACACTGG GGCCTCACGC TTGTCGGAGG 180
GCGTCCTCCA CCGCGCGTCA TCCCCGGGCC GAGGCCGACC TTAACGGTGG GCTTTTTTTT 240
TTTTTTTTTT TTTTGTAAAA TGGCCGCCGC GATGCTTTGA AAAGCTTCGC CGGCGAAATG 300
GCGGGACTGC CGAGTGCCCG GATGGAATGG CGCAGGGTGC GCGCTTGGCG CATGCGCTGC 360
TCCGGGGGCG GGGCGCTCCT ACCTCCAAAG TCCGGTTGTC CGCAGATGTG GAGCTGTGTC 420
GCGTGCGACC CTTTTACTCC AGCTGGCTCT ACCTCGGTTT TCTCTTCCCT TGTGGTTCCA 480
CGTGGGGAAC AAAAAAGCAC ATGTAGGCTT GAATGTTGTC CTTTTGTGCC CCAAGTTTAT 540
TGCCCCCAAG GTAGACTGGT TTCGTGGTAT AGTGGACTTA TTTTCCAAGT TGTCGGTTGC 600
CAATAATGAC TTTGTCTAGA TACCACGCCC CTTTCGCTAG CCACGCCTCT TGGGCCAACC 660
TCCTTTCTCC CTTGAGTCCA TCGTGCAAAA ACATTTCTCT AGTCCTTGGC TGAGTAAGCG 720
AGGCATCCCA CAACTGGCAC ACCTCCAGAC AGTACCCTAA AAGCGTATTT CAGTAGTGAA 780
GTTTCTCTGG CCCAACAACT CTATGCTAGT GAGGGTAGGC AGTCACTATC ATTTCTGTCC 840
CCAACCACAC ACATTTGCAA AGTGACCATG CCATTTTGAT CCTAACCTTG GGATTCTCTG 900
GCCAGGTGTA ATCAAGACCT AGAATCATTT AAGGTTAGCC TCAGCTGTAT GACAAAGTAT 960
TCCATATGCC TTTGGGATGA TAAAAGCAAA AAGAGTTCCC TCTTGTGTAG CCCAGAAGGG 1020
TATTGAACTT GCTGTGCAAT TGTATTTGGT TTTGGATTCT GTTCCTTTGC CTCCAACTCC 1080
CACAGGCTAG GCGAGATGGG TATTTGTTTT 1110