EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM060-00056

Organism

Mus musculus

Tissue/cell

Forebrain_E12.5

Coordinate

chr1:59450410-59453460

Target genes

Number: 4
Name	Ensembl ID

Trak2	ENSMUSG00000026028
Als2cr4	ENSMUSG00000038079
Als2	ENSMUSG00000026024
Fzd7	ENSMUSG00000041075

TF binding sites/motifs

Number: 18

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ATF3	MA0605.2	chr1:59451113-59451125	CATGACGTCATC	+	6.37
ATF3	MA0605.2	chr1:59451113-59451125	CATGACGTCATC	-	6.44
ATF7	MA0834.1	chr1:59451112-59451126	GCATGACGTCATCC	-	6.09
ATF7	MA0834.1	chr1:59451112-59451126	GCATGACGTCATCC	+	6.2
Creb5	MA0840.1	chr1:59451113-59451125	CATGACGTCATC	+	6.22
JDP2(var.2)	MA0656.1	chr1:59451113-59451125	CATGACGTCATC	-	6.27
JDP2(var.2)	MA0656.1	chr1:59451113-59451125	CATGACGTCATC	+	6.74
JUN	MA0488.1	chr1:59451114-59451127	ATGACGTCATCCT	-	6.03
JUND(var.2)	MA0492.1	chr1:59451113-59451128	CATGACGTCATCCTC	-	6.26
Nr2f6(var.2)	MA0728.1	chr1:59453254-59453269	TGAACTCCTGACCTT	-	6.04
Nr5a2	MA0505.1	chr1:59453246-59453261	GCTGGCCTTGAACTC	-	8.25
Nr5a2	MA0505.1	chr1:59453217-59453232	GCTGGCCTTGAACTT	-	8.42
RARA	MA0729.1	chr1:59453251-59453269	CCTTGAACTCCTGACCTT	-	6.5
Rarb(var.2)	MA0858.1	chr1:59451633-59451650	TGAACTAAATGTGACCT	-	6.12
Rarb	MA0857.1	chr1:59453254-59453270	TGAACTCCTGACCTTC	-	6
ZNF263	MA0528.1	chr1:59451710-59451731	AAAGGAAGGGTGAGGGGAGGG	+	6.03
ZNF263	MA0528.1	chr1:59451701-59451722	GGAGGAGAGAAAGGAAGGGTG	+	6.05
Zfx	MA0146.2	chr1:59451968-59451982	CAGGCCTAGGCTGC	-	6.33

Enhancer Sequence

GTTAAGAGTG CCGTGTGTTC TTCCAGAGGT TACGAGTTCA ATCTCCAGCA ACCACATGGT 60
GGCTCACAAC CACATGGTGG CTCATACATC TTCTAAAAGG CTTATTTGGC TCCTAGATCT 120
ACTGGTTTGA CTCCATGATT GGTTGTCACT ATGGCTTTCT GTGGCAAACC CATGGTGGAA 180
CAAAACTACT TACCTCATGG TGAGGGAAAA AAGAGGGGAC TGGGTTCCAA CACTTCCCCT 240
GAGGACACAA TTCCCACTGA TCTAAAAGTC TCTCACTCGC CCCCGTGTGA CTGTCTCCAC 300
CACCTCTCCA CAGCTTCAAG CTGAGGCCTG TGAGGGACAT TCCAGACCCA TGCTCCAGCA 360
TGTACCTCCC TTCTGAGGGC TACAAGTAGA CAATGAATAA ACGGAGTCTG GGAGAGAGTA 420
GATTACAGTT GCACCCACAG GCAAGATTCC TCATGAGGGC AGCTTGCTCC AGGAAACTCT 480
TCAGTCTCAA TTCTGCTCAT ATCTGATTGA CCACACAGCT GTCTTCCATC CCCATGGAGG 540
GAGGGACATA CGTCTATCCA CAGCCACTGT CCTTTTCAGG TCCTTCTGCC AGCTTGGGAT 600
TGAAAATACC TGGTGTGGGC TATGTGACTT CATTTGCATC TCTAATGTCA TTGTTGACCT 660
AGTACAGGCA CTGGGTCCTA TGCAAAGTGC TGCATCTCTG CCGCATGACG TCATCCTCAG 720
GGCAGATGTC AGTCAGATAA GTTGTGGCTG CCACCATTAT CTCAGTTTTA CATAGGAGGA 780
AACTGAAGCT CGGAAAAGAG TGACTGTAAA TTTCCCAAGG TTGCAACCCT AGAAAAGGGA 840
CAAAGTCACA TTTCTCAGCA GCAGGACACA CCTGACTGGG AGTTCTCTGA CTCTCTAGCA 900
TCAGTGCCTC TCCGCCCCAG AAGACCTGAG AGATTTAGTC AGGCTAAGTT GTCTTCTCCA 960
GCCCAGAGGC TACAGGGCTC TTTTATTCTG GAGCCTCCTT CAGAAGAGGT GTTCACTGAG 1020
ACCTGTAGTT TCATCTGGAA TTCTAGAAGA GAATTTACTC CCTGAAATCT AGCAGGTTCC 1080
CAGATGAAGG AGGGGAGCGG ACCTTTGCAT CAGCCACAGC TCAGAAACGG AGGCTTAATT 1140
GCCCTGCAAG CAGCTTGTTA GAGGCCGCGT TGGCAGATGA GGAGAACAGC CATAGAATCA 1200
GCCAATTAAG CAGCCAATGG TGCTGAACTA AATGTGACCT CCGACTTAAT TGTGGATGTT 1260
GTTTCTCAGC AGTTTCTCAC CAGTATGGAT TGGAGGAGAG AAAGGAAGGG TGAGGGGAGG 1320
GTGAGTGGGA AGGGGACGGG TTGGCTCTCC TTTGTTAAGG GGATCCAGGG ATTTCCAGCA 1380
CAGGAAAGTT GGTGACAAAG TAAGTAGCCT GTCTCTCTGC TACAGCCCCA GCAGGCAGAT 1440
GGAGGTCCTA GGCGGAGGAT AAAGAATGAC CCAGGCCTAT CAGGTAAAGG AAGTGTTTCT 1500
CCACAGGCCT GAGGCTGAGT CTCAGGGGCA CATTTCTCAG GAGGAGACAA GAGCGAGGCA 1560
GGCCTAGGCT GCACTTTCCA GCTCACACAC AGAAAGGAAA CTTCTCTCTC TTCAGCGCTC 1620
ATGCTAATAG CTCGCTGACT GGGGAGTCCG CCATCCCCAC CCTCATCCCC TCCATACGTC 1680
AGAAAGGTAC CTGAAGCACC GTATCCAGAA TCACACGAAC CCTGAGAACT GTGGGGTTAA 1740
GGGTTCAGAC AGAAGGAGCT GATACAATCT CCATGTCTAA CAGGAGCTGC CAATCTGGCT 1800
CCTTCTGGCC TGCTCCGGGG CGGGGAGGCT GGGGAGGCAC AGTGCTTGGG TTAACCTACA 1860
AAAAGTGGAG CAGCCTACAG CATCAACAGC AGCCTCAGAA TCAACCCCAG TTCTAAGGCC 1920
AGGTCCCCTA GAGAACTCCA GCAAGGCCCC AGCATGGCTG GTCTGCCACT GAGAAACCCC 1980
TCCCAGGGCA AGCCTGACTC CAGAACACCA ATGCTGTTGT CTGGACTGTC ACTGCGCCCA 2040
GAGGCCCTTC CTATCCAACT CTGACTCTTT GCTATGTGTT TTTCTTTCAT AGACAACAGA 2100
CTCCACCCAT CTCCCAATAA GCCTCCCGAA CTCTGTAATT TTTAAGACAG AGTTGGTGTG 2160
CCCCAAACTG GCTAACCGGA AACTCATAAT CCTTCTCCCT CTGTAACTAT ACACCACCAA 2220
GCCCAAGTCT TGTTTCTTCA CTTGGTCTGT GTGTCTGTGT GTCTGTCTGT CTGTCTATAT 2280
GTCTCTCTCA CTCTGTGTGT GTGTGTGTGT GTGTGTGCCA CAGAACTCAT GTGGAGATTA 2340
GAGGACAAAC TTGTGGGAGC CCTGGCAAGT GACTTTACCC ACCAGGTCAT TGCTCCACCC 2400
TGTACTAGTG CAATATTGGC TCCATCTGTC TCTTCCAGCC AGGAGGAGTC TAGGACATGC 2460
TACCCCAAAG TATCTTGTCA TTGAAGAAAG CAGCAGAAGT GGGAGAAGTG GGTTCTAAAA 2520
GCCTGGGGCA GTCACTTCCA CTCTCCCTTT GAAGTCATTA GGCCCTGGCT GCAGAGTGGT 2580
TTCCCGTGCA TGAAAGCAAG GAGTCTTTAT CTCACTAACC TGCTTAGTCT GGACTTTGCT 2640
CACTCTGCTG GTTTTGAATT TATTGTGATC CATCTGTCTC CAGCTGCCTC CAGCTTTCCT 2700
GGGCTAAAGT CACACTCCCG TGCCTCCAGG CCTGGTGGGT TTTTGTTGGT GTTGTTTGGA 2760
GGATTTGTTG TTGTTGTTGT TGTTTTAAGA TGGTCTTAAA AGGACAAGCT GGCCTTGAAC 2820
TTCTTAAGTA ACCAAAGCTG GCCTTGAACT CCTGACCTTC CTCTTGCTTT CACTGAAAAC 2880
TACGGGGTCA CAGGCACGCA CCACCACAAG CACTGTAAGG CCTATACTGA ATCAAACTGC 2940
GTGTTTTCCT CCCACGGGCA TGTGTGTACA AGGGAGCCAC AGAACGAGTA CGAAGGTCAG 3000
TGGACAAATC TTTGGAGTTG GTCCTCTCCT TCCAGCACGC AGGTCCCAGA 3050