EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM059-03584

Organism

Mus musculus

Tissue/cell

Forebrain_E11.5

Coordinate

chr17:45732560-45732820

Target genes

Number: 10
Name	Ensembl ID

Cdc5l	ENSMUSG00000023932
Aars2	ENSMUSG00000023938
Tcte1	ENSMUSG00000023949
Nfkbie	ENSMUSG00000023947
Slc35b2	ENSMUSG00000037089
Hsp90ab1	ENSMUSG00000023944
Slc29a1	ENSMUSG00000023942
Capn11	ENSMUSG00000058626
Mrpl14	ENSMUSG00000023939
Tmem63b	ENSMUSG00000036026

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr17:45732565-45732576	GCCCCGCCCCC	+	6.02
KLF5	MA0599.1	chr17:45732565-45732575	GCCCCGCCCC	+	6.02
ZIC1	MA0696.1	chr17:45732726-45732740	GGCCCCCCACTGCG	+	6.11
ZIC3	MA0697.1	chr17:45732726-45732741	GGCCCCCCACTGCGT	+	6.19
ZIC4	MA0751.1	chr17:45732726-45732741	GGCCCCCCACTGCGT	+	6.24

dbSUPER

Number of super-enhancer constituents: 7
ID	Coordinate	Tissue/cell

mSE_01356	chr17:45685507-45735218	Th_Cells
mSE_03863	chr17:45731675-45733146	Cerebellum
mSE_06571	chr17:45728192-45733218	E14.5_Liver
mSE_06977	chr17:45731419-45733363	Heart
mSE_08169	chr17:45731518-45733264	Kidney
mSE_08469	chr17:45724919-45734620	Liver
mSE_12650	chr17:45728256-45734563	Testis

Enhancer Sequence

CGACAGCCCC GCCCCCAGGC TCCTCGCCGC CCCCTCAACA GTTCACCGGC TCCCAGTCAG 60
AGACCCTACG CCTAGGGCCG CCAGGGCTGC TGGCTTCGAT GGCGGAGCAC GTCTTTGGAC 120
CCTTCCCAAC TGTCACCCGG ACACGCGAGC CTGGGAGGGG GGCACGGGCC CCCCACTGCG 180
TACCCCTAAT TTCCGCGCTG GCCCTGCGCT CCTAACTCCT ACACATTCCA CGGCGGGACT 240
CTTGCACAGA CAGGCCCTCT 260