EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM059-00060

Organism

Mus musculus

Tissue/cell

Forebrain_E11.5

Coordinate

chr1:59450200-59453460

Target genes

Number: 3
Name	Ensembl ID

Als2cr4	ENSMUSG00000038079
Als2	ENSMUSG00000026024
Fzd7	ENSMUSG00000041075

TF binding sites/motifs

Number: 19

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ATF3	MA0605.2	chr1:59451113-59451125	CATGACGTCATC	+	6.37
ATF3	MA0605.2	chr1:59451113-59451125	CATGACGTCATC	-	6.44
ATF7	MA0834.1	chr1:59451112-59451126	GCATGACGTCATCC	-	6.09
ATF7	MA0834.1	chr1:59451112-59451126	GCATGACGTCATCC	+	6.2
Creb5	MA0840.1	chr1:59451113-59451125	CATGACGTCATC	+	6.22
JDP2(var.2)	MA0656.1	chr1:59451113-59451125	CATGACGTCATC	-	6.27
JDP2(var.2)	MA0656.1	chr1:59451113-59451125	CATGACGTCATC	+	6.74
JUN	MA0488.1	chr1:59451114-59451127	ATGACGTCATCCT	-	6.03
JUND(var.2)	MA0492.1	chr1:59451113-59451128	CATGACGTCATCCTC	-	6.26
Nr2f6(var.2)	MA0728.1	chr1:59453254-59453269	TGAACTCCTGACCTT	-	6.04
Nr5a2	MA0505.1	chr1:59453246-59453261	GCTGGCCTTGAACTC	-	8.25
Nr5a2	MA0505.1	chr1:59453217-59453232	GCTGGCCTTGAACTT	-	8.42
RARA	MA0729.1	chr1:59453251-59453269	CCTTGAACTCCTGACCTT	-	6.5
RORA(var.2)	MA0072.1	chr1:59450374-59450388	CTGACCTACTTACA	-	6.29
Rarb(var.2)	MA0858.1	chr1:59451633-59451650	TGAACTAAATGTGACCT	-	6.12
Rarb	MA0857.1	chr1:59453254-59453270	TGAACTCCTGACCTTC	-	6
ZNF263	MA0528.1	chr1:59451710-59451731	AAAGGAAGGGTGAGGGGAGGG	+	6.03
ZNF263	MA0528.1	chr1:59451701-59451722	GGAGGAGAGAAAGGAAGGGTG	+	6.05
Zfx	MA0146.2	chr1:59451968-59451982	CAGGCCTAGGCTGC	-	6.33

Enhancer Sequence

CCGGGAAGCA TGTGCCCCCA CAACCATCAC AGAGCTCTTC TGAGAACTAA AACCATAATG 60
TAATGTGGGT GTGCTTATAA ACTATGCTTC CGTTCTGAAT GATGATATTG GTGATGGTGA 120
TTCCTGAACT CATTCTTTTT TAGTGATTTT CCATCACTGT GGCAAAGCCC TGTGCTGACC 180
TACTTACAAC CAACAATAAA GGGTTACTTG GTTAAGAGTG CCGTGTGTTC TTCCAGAGGT 240
TACGAGTTCA ATCTCCAGCA ACCACATGGT GGCTCACAAC CACATGGTGG CTCATACATC 300
TTCTAAAAGG CTTATTTGGC TCCTAGATCT ACTGGTTTGA CTCCATGATT GGTTGTCACT 360
ATGGCTTTCT GTGGCAAACC CATGGTGGAA CAAAACTACT TACCTCATGG TGAGGGAAAA 420
AAGAGGGGAC TGGGTTCCAA CACTTCCCCT GAGGACACAA TTCCCACTGA TCTAAAAGTC 480
TCTCACTCGC CCCCGTGTGA CTGTCTCCAC CACCTCTCCA CAGCTTCAAG CTGAGGCCTG 540
TGAGGGACAT TCCAGACCCA TGCTCCAGCA TGTACCTCCC TTCTGAGGGC TACAAGTAGA 600
CAATGAATAA ACGGAGTCTG GGAGAGAGTA GATTACAGTT GCACCCACAG GCAAGATTCC 660
TCATGAGGGC AGCTTGCTCC AGGAAACTCT TCAGTCTCAA TTCTGCTCAT ATCTGATTGA 720
CCACACAGCT GTCTTCCATC CCCATGGAGG GAGGGACATA CGTCTATCCA CAGCCACTGT 780
CCTTTTCAGG TCCTTCTGCC AGCTTGGGAT TGAAAATACC TGGTGTGGGC TATGTGACTT 840
CATTTGCATC TCTAATGTCA TTGTTGACCT AGTACAGGCA CTGGGTCCTA TGCAAAGTGC 900
TGCATCTCTG CCGCATGACG TCATCCTCAG GGCAGATGTC AGTCAGATAA GTTGTGGCTG 960
CCACCATTAT CTCAGTTTTA CATAGGAGGA AACTGAAGCT CGGAAAAGAG TGACTGTAAA 1020
TTTCCCAAGG TTGCAACCCT AGAAAAGGGA CAAAGTCACA TTTCTCAGCA GCAGGACACA 1080
CCTGACTGGG AGTTCTCTGA CTCTCTAGCA TCAGTGCCTC TCCGCCCCAG AAGACCTGAG 1140
AGATTTAGTC AGGCTAAGTT GTCTTCTCCA GCCCAGAGGC TACAGGGCTC TTTTATTCTG 1200
GAGCCTCCTT CAGAAGAGGT GTTCACTGAG ACCTGTAGTT TCATCTGGAA TTCTAGAAGA 1260
GAATTTACTC CCTGAAATCT AGCAGGTTCC CAGATGAAGG AGGGGAGCGG ACCTTTGCAT 1320
CAGCCACAGC TCAGAAACGG AGGCTTAATT GCCCTGCAAG CAGCTTGTTA GAGGCCGCGT 1380
TGGCAGATGA GGAGAACAGC CATAGAATCA GCCAATTAAG CAGCCAATGG TGCTGAACTA 1440
AATGTGACCT CCGACTTAAT TGTGGATGTT GTTTCTCAGC AGTTTCTCAC CAGTATGGAT 1500
TGGAGGAGAG AAAGGAAGGG TGAGGGGAGG GTGAGTGGGA AGGGGACGGG TTGGCTCTCC 1560
TTTGTTAAGG GGATCCAGGG ATTTCCAGCA CAGGAAAGTT GGTGACAAAG TAAGTAGCCT 1620
GTCTCTCTGC TACAGCCCCA GCAGGCAGAT GGAGGTCCTA GGCGGAGGAT AAAGAATGAC 1680
CCAGGCCTAT CAGGTAAAGG AAGTGTTTCT CCACAGGCCT GAGGCTGAGT CTCAGGGGCA 1740
CATTTCTCAG GAGGAGACAA GAGCGAGGCA GGCCTAGGCT GCACTTTCCA GCTCACACAC 1800
AGAAAGGAAA CTTCTCTCTC TTCAGCGCTC ATGCTAATAG CTCGCTGACT GGGGAGTCCG 1860
CCATCCCCAC CCTCATCCCC TCCATACGTC AGAAAGGTAC CTGAAGCACC GTATCCAGAA 1920
TCACACGAAC CCTGAGAACT GTGGGGTTAA GGGTTCAGAC AGAAGGAGCT GATACAATCT 1980
CCATGTCTAA CAGGAGCTGC CAATCTGGCT CCTTCTGGCC TGCTCCGGGG CGGGGAGGCT 2040
GGGGAGGCAC AGTGCTTGGG TTAACCTACA AAAAGTGGAG CAGCCTACAG CATCAACAGC 2100
AGCCTCAGAA TCAACCCCAG TTCTAAGGCC AGGTCCCCTA GAGAACTCCA GCAAGGCCCC 2160
AGCATGGCTG GTCTGCCACT GAGAAACCCC TCCCAGGGCA AGCCTGACTC CAGAACACCA 2220
ATGCTGTTGT CTGGACTGTC ACTGCGCCCA GAGGCCCTTC CTATCCAACT CTGACTCTTT 2280
GCTATGTGTT TTTCTTTCAT AGACAACAGA CTCCACCCAT CTCCCAATAA GCCTCCCGAA 2340
CTCTGTAATT TTTAAGACAG AGTTGGTGTG CCCCAAACTG GCTAACCGGA AACTCATAAT 2400
CCTTCTCCCT CTGTAACTAT ACACCACCAA GCCCAAGTCT TGTTTCTTCA CTTGGTCTGT 2460
GTGTCTGTGT GTCTGTCTGT CTGTCTATAT GTCTCTCTCA CTCTGTGTGT GTGTGTGTGT 2520
GTGTGTGCCA CAGAACTCAT GTGGAGATTA GAGGACAAAC TTGTGGGAGC CCTGGCAAGT 2580
GACTTTACCC ACCAGGTCAT TGCTCCACCC TGTACTAGTG CAATATTGGC TCCATCTGTC 2640
TCTTCCAGCC AGGAGGAGTC TAGGACATGC TACCCCAAAG TATCTTGTCA TTGAAGAAAG 2700
CAGCAGAAGT GGGAGAAGTG GGTTCTAAAA GCCTGGGGCA GTCACTTCCA CTCTCCCTTT 2760
GAAGTCATTA GGCCCTGGCT GCAGAGTGGT TTCCCGTGCA TGAAAGCAAG GAGTCTTTAT 2820
CTCACTAACC TGCTTAGTCT GGACTTTGCT CACTCTGCTG GTTTTGAATT TATTGTGATC 2880
CATCTGTCTC CAGCTGCCTC CAGCTTTCCT GGGCTAAAGT CACACTCCCG TGCCTCCAGG 2940
CCTGGTGGGT TTTTGTTGGT GTTGTTTGGA GGATTTGTTG TTGTTGTTGT TGTTTTAAGA 3000
TGGTCTTAAA AGGACAAGCT GGCCTTGAAC TTCTTAAGTA ACCAAAGCTG GCCTTGAACT 3060
CCTGACCTTC CTCTTGCTTT CACTGAAAAC TACGGGGTCA CAGGCACGCA CCACCACAAG 3120
CACTGTAAGG CCTATACTGA ATCAAACTGC GTGTTTTCCT CCCACGGGCA TGTGTGTACA 3180
AGGGAGCCAC AGAACGAGTA CGAAGGTCAG TGGACAAATC TTTGGAGTTG GTCCTCTCCT 3240
TCCAGCACGC AGGTCCCAGA 3260