EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM054-09074

Organism

Mus musculus

Tissue/cell

ESC_KH2

Coordinate

chr19:3894930-3896040

Target genes

Number: 18
Name	Ensembl ID

Ppp6r3	ENSMUSG00000024908
1810055G02Rik	ENSMUSG00000035372
Chka	ENSMUSG00000024843
Tcirg1	ENSMUSG00000001750
Ndufs8	ENSMUSG00000059734
Aldh3b1	ENSMUSG00000024885
Unc93b1	ENSMUSG00000036908
Aldh3b2	ENSMUSG00000075296
Acy3	ENSMUSG00000024866
Doc2g	ENSMUSG00000024871
Ndufv1	ENSMUSG00000037916
Gstp1	ENSMUSG00000060803
Gstp2	ENSMUSG00000038155
Aip	ENSMUSG00000024847
Coro1b	ENSMUSG00000024835
Rps6kb2	ENSMUSG00000024830
Ppp1ca	ENSMUSG00000040385
Pold4	ENSMUSG00000024854

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RFX1	MA0509.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	-	6.07
RFX1	MA0509.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	+	6.1
RFX2	MA0600.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	+	6.3
RFX2	MA0600.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	-	6.42
RFX3	MA0798.1	chr19:3895291-3895307	TGTTCCCATGGCAACT	+	6.13
RFX3	MA0798.1	chr19:3895291-3895307	TGTTCCCATGGCAACT	-	6.51
RFX4	MA0799.1	chr19:3895291-3895307	TGTTCCCATGGCAACT	+	6.01
RFX5	MA0510.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	-	6.5
RFX5	MA0510.2	chr19:3895291-3895307	TGTTCCCATGGCAACT	+	6.63

Enhancer Sequence

CAAAGGCTAT TTTTATTATT TTTAATTATG TGGTAGGAAG AGGTACATAC ACATGAGTCC 60
CAGAAGTCCA GGAGTAGGAT GCCCTGGAAC TGGAGTCGCA GGCAGCTGAG AACTGCCCAG 120
TGAGTACTAG GAAGCAAACA CAGGTCCTCT GCAAGAGCAA GCCAGGCTCT TACCTTCACT 180
GAGCCATCTC TCCAGCCCAA CTCCTGCTTC TCTACAACTA CCCATTTGTG ACAGTGCTTT 240
TCCCAAATGA CCTTTGTAGC CCTTACTCTA CCTGCCTGCT CAAATGAGCA GAGGTCAGAT 300
CAATCACACC GGTTAAGTGG TGATAACTGC CAGGACAGTG CTTGCTGCTG TTAAGGCATG 360
CTGTTCCCAT GGCAACTGGA ATAGCCAGCC TAGGAAGGCA AACTTCAGAG CTAGGGCTGG 420
CCTGCTAATG TCCTGGGGAT CCTCTACATT CGTCTGCCCA GCTATGTTAT GTTCCTCTTA 480
GCTTAGTCTG CCAAGCATGT GTAAGTGCCT TAAAGAGACT AGCATTCCCA GCCCTGTATT 540
CAGAGAGCTT CAGCAGGACA GTCTACAACC CCCACCCCCA ACCACCCCAG TAGCTTGGCC 600
GGGGCCATTG TGGCTCACTA TGCACAGAGC AGCTCTGGCC TCAAAGCAGC CTTTGTTGCT 660
GGGGCCTTCA GCTGCAAGAA CTACTTTGTA ACTTGGAAAA CTTGAGTCTC TGGCCTCTGA 720
CATGCACTGG CTATGTATGT GCCTCCCAGC CGGAGGGAAT GAAAGAGGCA ACTCCTACCT 780
CAGCTAAACA TGGAGGACCT TAAGGACTTC AGGGAATACA GGGCCAGTTT GCACACCTCG 840
AAAAGTGGGA AGCTCACTCC TCCCACCTGG TTGGAATCCA CTCCCACAAA ACTAAACTGG 900
TCCTTCTTGG CCTAGAGCTA ACCCTCTGGT TCCCAAGAGT CTGGAGATGT GCTCATGGGG 960
TATCCCAGCA GCATCTAAAG GCTTAGATGC TAAACCAGTG CCTCCTATCC TCTAACTCTG 1020
CTGAAGAATG GTCCAAATAG ATGTCATATT CAGAGTCTAG AGCTCTGGCC ACTGTAGTGT 1080
CAGCCTAACC CTGGTACCCC AGAGAGGACA 1110