EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM054-07712

Organism

Mus musculus

Tissue/cell

ESC_KH2

Coordinate

chr17:26121730-26123760

Target genes

Number: 30
Name	Ensembl ID

Gng13	ENSMUSG00000025739
Chtf18	ENSMUSG00000019214
Rpusd1	ENSMUSG00000041199
Msln	ENSMUSG00000063011
Narfl	ENSMUSG00000002280
Haghl	ENSMUSG00000061046
Fam173a	ENSMUSG00000057411
Metrn	ENSMUSG00000002274
Fbxl16	ENSMUSG00000025738
Wdr24	ENSMUSG00000025737
Jmjd8	ENSMUSG00000025736
Stub1	ENSMUSG00000039615
RP23	ENSMUSG00000093593
Rhot2	ENSMUSG00000025733
Wdr90	ENSMUSG00000073434
Gm10012	ENSMUSG00000057580
Rab40c	ENSMUSG00000025730
Pigq	ENSMUSG00000025728
Nhlrc4	ENSMUSG00000090113
A930017K11Rik	ENSMUSG00000025727
Solh	ENSMUSG00000037326
Rab11fip3	ENSMUSG00000037098
Nme4	ENSMUSG00000024177
Gm8186	ENSMUSG00000049124
Tmem8	ENSMUSG00000024180
Mrpl28	ENSMUSG00000024181
Axin1	ENSMUSG00000024182
Rgs11	ENSMUSG00000024186
Itfg3	ENSMUSG00000024187
Gm16580	ENSMUSG00000089764

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Myog	MA0500.1	chr17:26122001-26122012	CCGCAGCTGTC	-	6.32
STAT1	MA0137.3	chr17:26123729-26123740	TTTCTGGGAAA	+	6.02
STAT3	MA0144.2	chr17:26123729-26123740	TTTCTGGGAAA	+	6.32
Stat4	MA0518.1	chr17:26123729-26123743	TTTCTGGGAAATCA	+	6.2

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_03844	chr17:26121560-26123539	Cerebellum
mSE_11593	chr17:26119401-26123516	Placenta

Enhancer Sequence

GGTAATCTCA CAGTTTCTTA CTGAGTAGCA GTTCTTCCTG ATTTATTGCT GAACTGCAGG 60
GTCAGCAGCA AACACTCAGG TAGGCTCTCA GGTTCTCCTG AAACTCAGGA GGTATCTATC 120
CTGTTTTCGA GGCTAGGTGT TTCGCGGTCC TGTTTCAGTA TCTGTACTCA GGGACCCTAA 180
GAGCCAGCCT AGCAAGGACC ATCTGGCCAC ACAACAGGGT TCCCAAATCA GACGTGGAAG 240
GGCCCCTTTT TCAGAAAACA AAAAGAAAAT CCCGCAGCTG TCAAGGGGCT GCTCTGTAAC 300
TTTCTCGGCC TGCTGACAGG CCCGCAAAAA CAGAAGTGTG GGATGAGGGG GCACACAGGA 360
CGCTTTACTC TTGCTGCCGC CCCAGGCAGC TGCAGGTTTC TGCAGACAGT GCCCCCACGA 420
CCTATACCTT CGTACAGTGG GCCAACGCTT AGCCCCGGAC AAGAGGGCAC TCAAGGACAG 480
GCAGGCACCG AGGGTCGCCT GCGTCTGAGG TTCCTAGGCT GGCCTCGAGT GACCCACACC 540
TCCGGCGCGC TTCCCCCTCC CCTTCCCGCT CACCACAAGC CAGGCTACTG CTCCCAGGAC 600
AAACATGGAG CATCCCGGCT GATGCCCTGA GGCCGAGCTC TACGAGTCCT AGGCCGTCTG 660
GCCGGCCGCC TACCGTGGAA CTCACCTTAG CGAGCCGGCG GCGCCTCCTC AGCGCTCGCG 720
ATCGGTCTAG GCGGGCGCGG CCCTAGTGCC GGCCCTCAGT CGGTTGACCC ACAACTTCGA 780
CCGGAGGGCA CCAAGGGCCC CTTCGCGCCA GCCGCGATGC TCCGCCGGCT TAGCGCGTTT 840
TGGCCGCGAA GATCCGTCTC GGCCCGGCAA CCTTACAAAC GCCTCCGTAG CTAGCGCCCG 900
CCGTCCCGCC CGGCCTACCC GCTACGCCTT ACGCTGCTTC CGTAGCGTGG CGCCCAGCCG 960
GGGCCCGAGG CTACAGCGCG TCAGGGGCGC ACGCGGCACT GGGAACCCGG AGCCGGGACT 1020
ACGGCTCCCA CAGGGCAGAG CGACGCGGCT CAAGGCACGC CGGGAATTGT AGTCCATGAA 1080
TGGTCCTACC CTCTACTCTT TCCCTGAGAT TTCGCCCTCC CAACGTGACC GGAGACGCTC 1140
AGTTCACGGA TGCAGTTGGT ACTCCCAAGC TAGTTTGATG TGGCGCGCTG GATCCGGGAA 1200
GAGAACGGAC TACAGCTCCC AGGATCCCCT TAAGATGGGC TTTGGGCTCC GGTAGGCGTC 1260
CACGGGGTTC GAGTGTTACT GCGCCAGGGG AGATGTCGGG AGTCTGGGTC GTGATTTTGT 1320
ACAAGGTCTG AACCGGTTGT CTGCTGCGTT GGGGCAGTAG GTGGTACAGT CCAACCTAGC 1380
TGCCTTGGCT GCTTTCTACC TCTTCCAGCG ACTTCTGGTT TCTTTCCCAA CGGTCTGAAG 1440
CAGCAACCGT GCTGGCACTG CTCCTTCCGA GGTTACTCCA TCTGAGGTCT GTGTTTACTC 1500
GAGTGCTAGA TAGGCACGTC ACTTTTTCTA GAGAAACACT GGCATCTGAG GCAGTCCTTT 1560
GAGTTATGTT CACAAGAGCC CCCAAGCTAT TTCCCATTAG AGCCCTTTGG CTCCCCCGAA 1620
TTAACTTAAT TCCAGCCACT TGTCCTCTGC AACTGAAAGC TAACTAAGAA TCAGGCTGCT 1680
AGCCGGGCGT TGTGGCCCAC GCCTTTAATC CCAGCACTCG GGAGGCAGAG GCAGGCAGAT 1740
TTCTGAGTTC GAAGCCAGTC TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA 1800
GAGAAACCCT GTCTCAAAAA ACAAAACAAA CCAAACCAAA AACCAACCAA AAACCAAAAA 1860
CCAAAAACAA AAAACAAAAA AAAACATAGC ACATAGCAAA AGGACACCCG GCACTCTGAA 1920
TGTTGTGTGA GAGATTGGGT ACTATTTGCC CCCGGACCCA GAAAACCTGA GTCTGGCTCA 1980
GTAGAGACTA CAGATAATGT TTCTGGGAAA TCATTCATGC TCCAGAAGCT 2030