EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM046-02049

Organism

Mus musculus

Tissue/cell

ESC_Bruce4

Coordinate

chr3:88137740-88138300

Target genes

Number: 20
Name	Ensembl ID

Prcc	ENSMUSG00000004895
Hdgf	ENSMUSG00000004897
Nes	ENSMUSG00000004891
Apoa1bp	ENSMUSG00000028070
Iqgap3	ENSMUSG00000028068
Mef2d	ENSMUSG00000001419
Rhbg	ENSMUSG00000001417
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Mir1905	ENSMUSG00000084728
Rab25	ENSMUSG00000008601
Lamtor2	ENSMUSG00000028062
Gm10704	ENSMUSG00000074479
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NR2C2	MA0504.1	chr3:88138018-88138033	TGCCCTTTGACCTGC	-	6.51
Nr2f6	MA0677.1	chr3:88138018-88138032	TGCCCTTTGACCTG	-	6.2
Rxra	MA0512.2	chr3:88138018-88138032	TGCCCTTTGACCTG	-	6.03
ZNF263	MA0528.1	chr3:88137997-88138018	CCCTTCCCCCTTCCTTCCACC	-	6.06

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_11794

chr3:88137461-88143518

Placenta

Enhancer Sequence

CAGAGAGGCG GGCGGGCAGC AGAGGAGCGA AATGGAGGAT CCCTTTCAAA ATAAATGTCA 60
TCCAGCAGGA CAAGGGTGAG TCAGGGGGCA CAAGCAGAGG CAGGTGTGGC CTGTCTATAC 120
CCACACCTGC CTTCTACTCT CTCCACTAAA ACTCCCGGAT TTTTGGCCAC CCTGGCTTTG 180
GAATGGGAGG CTGAGGTGTC TAGGACTAGG CGGAGTTTCT CTACAGCCAA GGGTCACCCT 240
ATAGATAGAG AAATTGGCCC TTCCCCCTTC CTTCCACCTG CCCTTTGACC TGCAGGTCCC 300
TCCAGGAACT CGACACCAGA TCTCGGTTCC TCAGTCTCCA TTCCAGGAGT CGGTCATTTT 360
CTGAACTCTC CCATTGCCAG TCTCACCCGA TTCAGCTGGG CTGGGCTCCA CTCAGACTCC 420
CAGCTCTAGT GTGGCCGTTC CCAAGCCTTC CTCTTGTTTC CTCCCCTGCC ACCCTCCAGC 480
TCACAGCTTC TGGATTGGGC TCCCTTCGTT CACCTCTTGG GCCCCTCCTA CCCCTGCCCT 540
TTGGATCCAT GATACCCTCT 560