EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM029-01139

Organism

Mus musculus

Tissue/cell

Cerebellum_neonate

Coordinate

chr1:95010720-95012900

Target genes

Number: 9
Name	Ensembl ID

Gpc1	ENSMUSG00000034220
Dusp28	ENSMUSG00000047067
Rnpepl1	ENSMUSG00000026269
Capn10	ENSMUSG00000026270
Kif1a	ENSMUSG00000014602
Agxt	ENSMUSG00000026272
Sned1	ENSMUSG00000047793
Ppp1r7	ENSMUSG00000026275
Pask	ENSMUSG00000026274

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr1:95010816-95010828	GTTTGTTTGTTT	+	6.32
IRF1	MA0050.2	chr1:95012070-95012091	ATAGGAAAACTGAAACCAAGA	-	6.65
RFX5	MA0510.2	chr1:95011785-95011801	GGTTACCGTAGTAACC	+	6.03
ZNF263	MA0528.1	chr1:95012121-95012142	TCCCCCCCCCCCCCCGCCCCC	-	7.12
ZNF740	MA0753.2	chr1:95012122-95012135	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr1:95012123-95012136	CCCCCCCCCCCCC	+	6.03

Enhancer Sequence

TGTAATGGTC TCCATCTGCT GTAAAGAGGA GCTTCCTTCA TGAGAGCTGG GTGCAGGAGA 60
AATATTTAGA ATGTTGTTGG CGATTATGCT GGTTTTGTTT GTTTGTTTTT TGTGAAGTGG 120
TGGTTGTATG TTCTCTTCCA AGACCCATTA CCTTACACAA AGAACCACTA CAGGCAACTG 180
AAGACTGCCA CAAGCTGGAG GAAAATCTTC CTCAGGAAAG AATACAGCAA TTGTTTATCC 240
AGTAACAAAC GGTCAGATCT GTAAGCATGC ATACACAGAA CATACAAATT GAACGGGTTG 300
TGTTTATGCA TTTAGGACTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTAAC 360
AGTTAATAAG AGGCCATACA TTTGAGAGAG CGCAAAATGG GGTATATGGG AGGTTTTGGA 420
GGGAATAAAA AGGAGAAATA ATGTAATTAT GTTATGATCT CAAAAAAAAA AATTAAAGGT 480
TCAACCACAT AAAAAGTCAT AGAAAAAACA AGTCAACACA TCGGAAGAAT TCAAGTTCTT 540
AGACGAAAGG GACAACCAGC CTTTCAGAGG CTGCCCACCA GGAGAAAAGT CAAATATAGA 600
GGATCTGTCC AAACTGAGCC CAGGAAGAGC GCTGAGGCAT CCGGACAGCT ATTGCGAAGG 660
TCTGGAGGAT AAGGGGAAGC AATCAGGGAT TTGGTGGACA CGGAAGCCGG AAGCCAGCAA 720
AATAACCATC TCACCCAGGA CAACCTTGAG GGAAGACCTG AAGGGCATTC TGCAAGGCAC 780
AAGGCGGGTC AGGAGGCCAT CCTACACCCT GCACAAAAGG GAAAGGCTAA GAAAGATCCC 840
CGAAAGACAC TGAAACAATA TTTGAGGTTG TCCTGTCTTA AGATGCAAAG AATCAAATCT 900
AGAGACCAAG GACAAAAGCC TTGGAATCCT TTTTGGAAGG GTGAACCTCG AAGGTTTATA 960
GCCAGATCGA TCTGGAGCTT GAGAGGATGC TGATAACTTA AGCGGATACC ACTGCCAGGC 1020
TCTGCCTTGA GCCAAGCCCC TCGAGCCACG CCCCACAGGA GGCCTGGTTA CCGTAGTAAC 1080
CTCTTTGGTA GTTGCTAGAC TCCCTGCCCC GCCCTTCTTG TCGCCTTGGC AACTGTGGGG 1140
CTGACTCTGG GAGCCAGTGA GATCTCGAGC CTGGTCTTGC CTGGCTGCTG TAGGGAGGAC 1200
TGCTGGTTCC TGCAGGTTTC TGAAGTGGCA GAGTCTGGGG CGCTCTGAGG GTTCGCATTT 1260
GCTCACCGCT TTTGCTTACC GTTGGGTCCT CACGCAGCCT CACAGATTGA ACAATGGAAA 1320
CCTTTAGGCA TTCAAAGCTT CATGCTACAG ATAGGAAAAC TGAAACCAAG ATAGGAAACG 1380
AGAGGACGGA CTTGCGCCGC CTCCCCCCCC CCCCCCGCCC CCGCCCCGGC AAAACTTCAT 1440
CTCTGGGTCT CTCAGAACCA ACTCACCCCA ATTTCGCTCA GATAGTTCCC TAGGGTGACT 1500
GAAGGGCACT ATTGCTGCCC CTGTGGCTGG TCTGGGTTCG CCCAGAGCTA GCTAGCTTCC 1560
TGATGGCCTC CGCATCCTTG TTCCGCTCCA GGTGCTGTGT GGCTGCTGGA CCATTATGGA 1620
AGGCCATTCC TGTAACCGAC CATACTTTTT CTTCAGCTTT TCCTAAACCG TGTTCCCAGT 1680
GTATTTACAA TTTTTTTTGT ACTCTTTGAG CTAGTTTACA TTTGGCATAT TTAAACTAAT 1740
CTTTTTAGGG GGCCTCTTTG TTTGCTTCTT TGATCAATTT TATCTTATAG CTATAATCTC 1800
AAAGTGGCTA GATCTAACTT TTGGAAATAT TTGTCTTTAT TATCTAAATT GTTACAATTT 1860
GATCTGTTTT TACTATATTG GATTTGTACT AGATTTTAGT TTGTGAATGT AAACGGAAAG 1920
TCACAGAAAA AAATTAGATG ATATAGTATT TTTTTAATTT TTTAAACAAA TTATCTTTTC 1980
CAATATACTG AAAATTAATA ACAGCAATAG AAACAAGAGA TCAGACTTGT TAGAAATCAG 2040
AATTTTATAG GCCTTGTTGG CATAGCTGAC TCTTTCACCG GTTCTTGGGA CCCTGTTTCT 2100
CCTACTGGGT TACCTTGCCC AGCCCTGATA TGGGAGTTTA TAGCTAGTCT TACTGTAACT 2160
TGTTATGTTC TATGTTATAT 2180