EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM028-21088

Organism

Mus musculus

Tissue/cell

Cerebellum

Coordinate

chr4:41580460-41581990

Target genes

Number: 21
Name	Ensembl ID

Ubap1	ENSMUSG00000028437
Kif24	ENSMUSG00000028438
Nudt2	ENSMUSG00000028443
AI464131	ENSMUSG00000046312
1110017D15Rik	ENSMUSG00000028441
1700066J24Rik	ENSMUSG00000036162
Gm12404	ENSMUSG00000087623
2310028H24Rik	ENSMUSG00000028439
Dnaic1	ENSMUSG00000061322
Gm12406	ENSMUSG00000084761
Enho	ENSMUSG00000028445
Gm12405	ENSMUSG00000087054
Cntfr	ENSMUSG00000028444
Il11ra1	ENSMUSG00000073889
2810432D09Rik	ENSMUSG00000036114
Dctn3	ENSMUSG00000028447
Galt	ENSMUSG00000036073
Sigmar1	ENSMUSG00000036078
Ccl27a	ENSMUSG00000073888
Gm13308	ENSMUSG00000078747
Gm13307	ENSMUSG00000085730

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Crx	MA0467.1	chr4:41581846-41581857	TTAATCCTCTT	-	6.14
RREB1	MA0073.1	chr4:41580857-41580877	TGGGGTGGGATGGGGTGGGG	-	6.18
RREB1	MA0073.1	chr4:41580867-41580887	TGGGGTGGGGTGGATGGTGG	-	6.57
SOX10	MA0442.2	chr4:41580977-41580988	TGCTTTGTTTT	-	6.02

Enhancer Sequence

CAGAGGTGCA GAGCAGATCT GTGTTTGCCT CAGAACGGTT GAGAAAAAAA ATATGGGAGT 60
GACTGTTAAC GAGTGCAGAG CTTGTCCTGT GGGTGAAGGA AACACCTTAA ATTTGCTGTG 120
ATAATAATGG CCTGATAAGT GAATATGCTT AAAACCAAGA AGTGTCTACT TGCAGCATGC 180
TAGATGGATG CACCTTATAG CATGTGAATT ATATCTCAAT AAAGCTGTTA TAGCAAACAG 240
AAAAGGCCGG GCTTGATGGT AAATGCCTCT GCCTACCTAT ATAACCCCAG CATTCAGAAG 300
GCCGAGACCA GAGGACTAAA CGTTTGAAGG GAGTCTGGAT TACATAGCAA GTGCAGGCAG 360
GCCTGAGTGC ACTGTATATG GAGACCTGAG GGTAGGGTGG GGTGGGATGG GGTGGGGTGG 420
ATGGTGGGGG TGTTGGTGTT TCTTGGGAAA GGCTTCTTTG AAGAATCGAG AAAGACTGAG 480
AGCTGAATGA CAAGCACTGG CCTTTGACTT TTTTGTTTGC TTTGTTTTTT CTTTGGGGGG 540
GGCACAGAGT CTCTCTATTA TGTAGCTCTT ACAACAGCTC TGTACCTGTT CTCTTACAAG 600
CTAGCTTCCA TCTCACAGAG ATCCATCTGC CTCTGCCTCC TGCGTGCTGG AATCAAAGGT 660
GTGCGCCCTT TGCTAGCCTT GCAGGACTCA TTGTGAGGAT GCGGTGGGGA AGCTGTCCAC 720
AGGACACCAG TGTTCTGGCA TAGGATGGGC TCATCAGCCT TAGGGGCAGA GGCAGCCTGC 780
CTGGGGCATA GTGAGCAAGG GGGAGGGCTG AGGGTGGCAC GAGGAATCTC CCTCCAAAGA 840
GACTGGGCGA ACTGTTTAAG GCAAGTCTGG GAAGTAAAAG CAGGGAGACT AGGTAGCTGT 900
GGCAGTGGCA GCCGATAGTG ATTTGGACTC TGAGTGAGGC AAGGATACTA TCCAACATTT 960
ATTAGGCACT TAGGCATCAA ACTCGGAGAC CATTTTGTAT GTATTAGCTG AGATAGACCC 1020
CTGACTCTGC CACTTACAAG CAAGTTAGCT TCCAAGTCCT CATTTATAAA ATAGGGATAG 1080
TAATAGAACC ACAGTGTGGA GTGGTTGTGA GGGTATAATT AGACGATCCA ACCTTGCAAC 1140
ACTCCTGCCC AGAGCCTGGA ACATAGTAAG CCTATTAGAC TGGATAAATG GTGGCTGCCA 1200
GTGTTGGGTT TCTTTGCGGT ATTTTCATAC TTACATCATT AGAGTTCGTT CCGATCACCC 1260
TCTTCCTTCC CTGTCGCCCT CCCTCTGATC CCGTTACCGG TCCCCTTTGT CCCTCTAAGT 1320
CTCCCCTCTT TGTCATATAC ATCCCATAGC TGCTGTTACC ATTGCTTCTG GATATACTTA 1380
AGATCCTTAA TCCTCTTTAA CCTCACTCCC TCATGAAATC CCTTCTGTGG CCTTCAGCTC 1440
TATTGTGCTG TTAGCCTTCT GTGGGGTTCT CAGAAAGCCC AAGATGGGAG ACCAGGGCCT 1500
GGTTTACCCG ACTGTGACAA TAACCTCTCT 1530