EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM028-20230

Organism

Mus musculus

Tissue/cell

Cerebellum

Coordinate

chr3:94997800-94999550

Target genes

Number: 28
Name	Ensembl ID

Psmb4	ENSMUSG00000005779
Selenbp1	ENSMUSG00000068874
Rfx5	ENSMUSG00000005774
Pi4kb	ENSMUSG00000038861
A730011C13Rik	ENSMUSG00000084846
Gm15265	ENSMUSG00000086288
4930481B07Rik	ENSMUSG00000085956
Psmd4	ENSMUSG00000005625
Vps72	ENSMUSG00000008958
Tmod4	ENSMUSG00000005628
Scnm1	ENSMUSG00000092607
Sema6c	ENSMUSG00000038777
Gm16740	ENSMUSG00000085137
Gabpb2	ENSMUSG00000038766
Mllt11	ENSMUSG00000053192
Cdc42se1	ENSMUSG00000046722
Gm128	ENSMUSG00000068860
Bnipl	ENSMUSG00000028115
Fam63a	ENSMUSG00000038712
Prune	ENSMUSG00000015711
Anxa9	ENSMUSG00000015702
Lass2	ENSMUSG00000015714
Gm10691	ENSMUSG00000074414
RP24	ENSMUSG00000093424
Setdb1	ENSMUSG00000015697
Arnt	ENSMUSG00000015522
Ensa	ENSMUSG00000038619
Mcl1	ENSMUSG00000038612

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOXP2	MA0593.1	chr3:94999282-94999293	AAGTAAACAAA	+	6.62
Foxd3	MA0041.1	chr3:94999286-94999298	AAACAAATATTC	-	6.18
IRF1	MA0050.2	chr3:94998233-94998254	TCTTTCTTTCCCTTTCTTTTC	+	6.46
IRF1	MA0050.2	chr3:94998158-94998179	TTTTACTTTTTCTTTTTTTTT	+	6.8
ONECUT2	MA0756.1	chr3:94999312-94999326	TTTATTGATTTATT	-	6.29
ONECUT3	MA0757.1	chr3:94999312-94999326	TTTATTGATTTATT	-	6.71

Enhancer Sequence

TCCTAAGATT TTTTTCTTCA CAAACTGTAA CTTCTTCACT GCTATGTAAC TTGATACTTA 60
ATTTTCATTT CTTTTTTTAC TTTATGACTG TGTAGTGCAC CCAGAGGCCA TAATGATGTG 120
TGGGAGTTGG TTCTCTATCT GCCATGTGAG TTCCTAGGTT GCTGGGCCTG GTGGGAGCAC 180
TCACCTGCTG AGCCATATCG CTGGCCCCTG AAAGCTTACT GTTGTAGTTA TCAGAAGGGC 240
GTTCTGCAAC ACATATGCCC AACTCCACTG GAAACGCCAG AACTATGTTC CCAGCCAAAC 300
TTAAGCACAC ATGGTGTAAC CATGAAAGGT GGGAGGAACC AGATTGTGGA TTTCAATATT 360
TTACTTTTTC TTTTTTTTTC CTTTCTTCTT CTTTCCTCTC TCCTTTTCTC TCTTCCTTTC 420
TCCTTTTCTT CTTTCTTTCT TTCCCTTTCT TTTCTTTTCT TTTCTTTTTT TTTTTGGATA 480
TGGGTTTCTC TGTGTAACCA GAGCTGTTCT GGAACACTTT CTGTATGTAG ATCAGGCTGT 540
CCTTAAACTC ATCGAGATCT GACTGCCTCT GCCTCCCAAT TACTGGGATT TAAAATATGT 600
GCCACCATGC TTGGCACAGT TCTTTGATAT TTTATATGTA ATTTAAAAGT GCTGGAGAAT 660
AAAAAACAAA AGAAATCGTA ATTCACTTAG CAGATGGGCC ACCAAGCTGA GGCTCTGAGA 720
GAGCTGGAGA GGGGGCTGAC ACCAAGTGAG GGCTGCAAGT GTGGCCAGTC CTGGGGTGAT 780
GGGATCTGAC TGTGATGCCG AGGCATGGGG TCACCGAATC CATTAGAAAG GGAAAATGAG 840
GACCAGTGGG AAGGAGATAA ATCCTCCCTC AGCCTCGCCC CATCCTTACT GTGTTCCCTA 900
ATCCAAATGG ACTTCAGCCA ACTGTGTGGT TAAAATTCTT TTAAGGCTGA GATGGCTCAG 960
CAGTAAAGGT GCTTGCTGCC AAGCTTGATC CCCAGAAGCC ACATGGTGGG AGGAGGAAGC 1020
CACTCCTGCG ACCTGTCTTC TGACTCCACG TGTGCTTCAG CATGTTCCAC TCCCTCCACA 1080
AAGTAAATGT TCCATTGACA ACAGTAGATT AATTCAATGT GCTTGGCACA GTCGACTACA 1140
TTTCCCTTAC TTATTTGTTT TCTTCCATTG CTAGTGCCTA GCAGAACGTG ATGTCACCCA 1200
CTCCCGAGGC CTCTGTGCAG CCCTCCTTGG CAGCAGGCTT ACAGAGCATG GCTCCTCACA 1260
AACTGAGCAT GGTGAGGGGA CAATGCTCCT CCTGGGCTGT GCATCCGCAG ATAATGACAG 1320
AACAGGACAG CCTTACAGAG CACACATGCT TAACAGCCTC AGGGTTTGAA GCTGGATAAA 1380
TGATTGACAA TGTCTATGGT CCCAGCACAA CAGAGCTGAG CCAGGGAAAT GGCTCAGTAC 1440
AAGTCTAAGA CCAGCTTAAA CTACACAGTG AAAAGGTGTC TCAAGTAAAC AAATATTCCC 1500
CAAACTTCAC ATTTTATTGA TTTATTTTTG CTTTTGGAAA CAGGGTCTTG TGTAGCATAG 1560
ACTGCCAACA CAGTTGCTAC GTAGCCATGT ATGACTTTGA ACTCTGACTC TTTGGCTGCC 1620
ACCTTCCAAG TGTTGGGCTG TAACCATGCG CTTTCATAGC TAATACAAGC CTCAAGTTTC 1680
CAGTTCCAAA CACTCAGCAA GGCACAATGG GTTAATGCTT TGAAAACCAC TATTTTCTAC 1740
TTTAACTACA 1750