EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM028-20052

Organism

Mus musculus

Tissue/cell

Cerebellum

Coordinate

chr3:88252500-88253600

Target genes

Number: 32
Name	Ensembl ID

Bcan	ENSMUSG00000004892
Apoa1bp	ENSMUSG00000028070
Mef2d	ENSMUSG00000001419
AW047730	ENSMUSG00000091886
Gm3764	ENSMUSG00000091070
AC044864.1	ENSMUSG00000092876
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Gm10704	ENSMUSG00000074479
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
RP23	ENSMUSG00000093390
2810403A07Rik	ENSMUSG00000028060
SCARNA15	ENSMUSG00000088604
SNORA42	ENSMUSG00000084433
5830417I10Rik	ENSMUSG00000078684
Syt11	ENSMUSG00000068923
Gon4l	ENSMUSG00000054199
Ash1l	ENSMUSG00000028053
U6	ENSMUSG00000065786
Rusc1	ENSMUSG00000041263

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr3:88252683-88252704	GTCTAGTTTTACTTTTTTTCT	+	6.07
Rarb	MA0857.1	chr3:88252586-88252602	GGACCTTTGGACCTTT	-	6.09
SOX10	MA0442.2	chr3:88253242-88253253	GTCTTTGTTTT	-	6.14

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_01438	chr3:88250596-88336770	Th_Cells
mSE_07949	chr3:88250041-88253855	Intestine

Enhancer Sequence

TGACAGACCC TGCACACCAG AAACCTTCGC TTCCTGATAC ATGGTTGGCA GGTGTCTAAA 60
CACTGTGATG CCAGACTGTG GCTGTGGGAC CTTTGGACCT TTCTTGGTCT CTGAGCAAGT 120
CCTTCCTGTT TTCTCACTCA TAACGATAAC CTATGGCCAT TAGGAAGCTA GTGCTAAGTT 180
TGTGTCTAGT TTTACTTTTT TTCTTTTTCT TTTGTTTTAA ATTATTTATT TTATGTATAT 240
GAGTACACTG GACAGTACAG TATATGTAGC TGTCCTCAAA CACATCAGAA GAGGACATCA 300
GATTCCATTA CAGGTGGTTG TCAGCCACCA TGTGGGTATT GAATTGAACT CAGGACCTCT 360
GGAAGAGCTG TCAGTGCTCT GAACAGCTGA GCCATCTCAT CAGCCTGTGT TTAGTTTTAC 420
AATAGCATTT GAGCGCTACA GACCCTTGTC CTGCCTTTCT GGTATTTTCT TTTACTTCCA 480
TTTCCTAGCC TAGTGAATTG GTTTTGTTTG TTTGTCTTAA CACAGTCTCC AGTAGCTGAG 540
GCTATCATTA GTATGGAGCA GAGGATGGCC TCCTGTCTCT TCTTCCCATC TACCACCATC 600
CCTGACTTAG GTGGTGCTGG GATCCAACTC AGGGCTCTGT GCATGCTAGG CAAATGCTCT 660
ACCAACTGAG CTACATCCCC AGCCCTTGTT TATTTTTGAG GCATTAGTCC TTGAACTCCT 720
GATCTTCCTT CCTCACCACC ATGTCTTTGT TTTATCAATG TTTTATTTTG TTTGAGACAA 780
CAAGCTCTCT CTGTGTAGCT CAGACTGGCC TCCAGTTCCT TAGCCTCTTG CCTCCACCTC 840
CCAAGTGCTG AGAACACGGC ATGCAGCATG ATGCTAGGTA TTTTGCTGAT TTCTAGTGTC 900
TGCCTCCTGT AAGCTTCCTT CTAGGCAGAA TGAAGCTAGT CTCTGAGCTT TGTTTCTTCC 960
CTACACATGA GAGACAGTCC GGTTCCGGGG GTCTGGTGAT GCTCAGATGC CTTCCTATGC 1020
AAAGCACGGA ATGTAAAGTA GGCTCTATCC GCTCCCGCCT CCCTGGGTCG CAGCCCTCCT 1080
TTTCCCTGCC TTGCTGCTCA 1100