EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM028-14907

Organism

Mus musculus

Tissue/cell

Cerebellum

Coordinate

chr18:37923950-37925230

Target genes

Number: 20
Name	Ensembl ID

Pcdhb3	ENSMUSG00000045498
Pcdhb10	ENSMUSG00000045657
Pcdhb12	ENSMUSG00000043458
Pcdhb15	ENSMUSG00000047033
Pcdhb16	ENSMUSG00000047910
Pcdhb17	ENSMUSG00000046387
Pcdhb18	ENSMUSG00000048347
Pcdhb19	ENSMUSG00000043313
Pcdhb20	ENSMUSG00000046191
Pcdhb22	ENSMUSG00000073591
Pcdhga9	ENSMUSG00000023036
Gm16882	ENSMUSG00000085906
Diap1	ENSMUSG00000024456
Hdac3	ENSMUSG00000024454
Rell2	ENSMUSG00000044024
Fchsd1	ENSMUSG00000038524
Arap3	ENSMUSG00000024451
Pcdh1	ENSMUSG00000051375
Rnf14	ENSMUSG00000060450
U6	ENSMUSG00000089296

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr18:37924714-37924735	TTTTAATTTCACTTTTATGTC	+	6.03
JUN(var.2)	MA0489.1	chr18:37924535-37924549	CTGAGTCATCTCTC	-	6.02
POU4F2	MA0683.1	chr18:37924888-37924904	CACATTAAATATGTAC	-	6.04

Enhancer Sequence

CACGTGAGTT TCAATTAGCC TTTCATTCGC AAGTTGTTTC GTTTTCAAAA TCTTTTGGAA 60
ATATTTTATA TTTGTCTGTC TTTTGGTTGG TTTACTTATT TTTTATAATA CATTTAGAGG 120
CAGGGTTTCT CAACATAGCA CTAGTTGTCC TGGAACTTAG ACCGGGTTGA CCATAAACTC 180
TTAGAGATCC TCCTGCCTCT GCCTCTACCA CGATCTATAT TCTTTACAAA GAATATCTTA 240
GAGCACATTA TATACCAACA GTCTCAGTTC TTTCCTATCT TTGCTCTATA TGCCAGTAAC 300
TACTGCGCCA TTAGGCTTCA AGGACTTTGA AATATTTTAT CTATGTACAC CCAAGCGCAG 360
AGCTTAGAAG TATTATGATG CACTGCCACT CAAGCAATTT AAATCTCTCT CTCTCTCTCT 420
CTCTCTCTCT CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCATGCGT GCACCATGTG 480
GCAGTCAGAG GACAACCTTT GGGAATCGGG TCTGTGTTTC TACCATGTGG GTCCCAGAAA 540
TGGACCTCAG ATTCACTTAT GCTTGGCAGC AAGCACCTTT GCTGGCTGAG TCATCTCTCA 600
GTGGTCCTAC TCAAATACTT TAGTTGAGCT ATACTTTTGT CTTTCTGTGG TAGTTTCTTG 660
GGAGATCAAT ATCTTGATCT TTAAACTGAG AAATGATATA TACAAAAAGT TTTCAAACTA 720
TATGATAATA ATTTGGTAGT GATATTCAGA TATAGCAGGG GTTCTTTTAA TTTCACTTTT 780
ATGTCTTACA AGCAAGTTTT CTTCAAATCT TATTTTATGG CTATCAGAGA CTGAAGGGTA 840
GCTCAATTAG AGTTTATACT TAAGCATGGC TGATAGCTAG AGTCCACTGT CCAGCAGTCG 900
TCACTAAAAA GTGCTTGCTT TTAAAGACAG TTTCTAGTCA CATTAAATAT GTACAGGCAG 960
TCGTCTCCTA GAATCTTTTC TACATTTTGA TGTGCTTCTA AATATATGGC CAGTAGTTCT 1020
GTTTTCAAAA TTACCCAGGA GAAGGAAAGT TTACAGTATT CCTCAGATTA CTAATTTTCT 1080
TTTACTAAGT CTTTCTCAAC ACCAAATGTC CTTTTTGCAA TACAATACAT CTGTATAACT 1140
GTATAGTAGA ATCTCCAGTT CAAGTTAATG CAGGTTGGAA TCTTTCCACT TACTCTAAAG 1200
GTGTCCATAA TCTTCATTGA TTGATTAGAG TCACATATGA ATCTAATAAT ATGCATTATA 1260
ACAGTTCTCA TGTTTGTTTT 1280