EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM011-00433

Organism

Mus musculus

Tissue/cell

Brown_preadipocyte_E18.5

Coordinate

chr19:7342350-7342760

Target genes

Number: 9
Name	Ensembl ID

Trmt112	ENSMUSG00000038812
Prdx5	ENSMUSG00000024953
Dnajc4	ENSMUSG00000024963
Cox8a	ENSMUSG00000035885
Naa40	ENSMUSG00000024764
Rcor2	ENSMUSG00000024968
Mark2	ENSMUSG00000024969
2700081O15Rik	ENSMUSG00000053080
Rtn3	ENSMUSG00000024758

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr19:7342651-7342662	GCCCCGCCCCC	+	6.02
KLF5	MA0599.1	chr19:7342651-7342661	GCCCCGCCCC	+	6.02
SP1	MA0079.4	chr19:7342648-7342663	CAGGCCCCGCCCCCC	+	6.65
SP3	MA0746.2	chr19:7342650-7342663	GGCCCCGCCCCCC	+	6.11
SP4	MA0685.1	chr19:7342648-7342665	CAGGCCCCGCCCCCCGG	+	6.07
Zfx	MA0146.2	chr19:7342648-7342662	CAGGCCCCGCCCCC	-	6.19

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

mSE_04231	chr19:7341516-7342638	Cortex
mSE_04600	chr19:7339051-7343648	E14.5_Brain
mSE_10499	chr19:7338182-7342632	Embryonic_stem_cells
mSE_10499	chr19:7342687-7344346	Embryonic_stem_cells

Enhancer Sequence

GGGGGGCAGG GAGTTCCTTG GCAGGAAGGG AAATGGAAGG AAAAGCTGGG CTCCACCCGG 60
GCGGTCGGAC AGGCGGCCTC AGGGCCCCCG GGGCAGGCCA CAGTAACCAG AGCCCAGTAG 120
TGTGTGGAAC CGGTGTGCTT GTGGGTGGGG CTGACCCCGG GCTTCTCCTG GGGGGCACTG 180
GGGTCTACCC AAAAGGGCCA AGTCTGAGAA CTCAGAGACA CCAAGGGTGC TCCCTGGGGG 240
GGGTACGTGC GCCCCATTCC GGTCCTGACC CCACCCCCTG GAGGTCTAGC CCCGGCCCCA 300
GGCCCCGCCC CCCGGGCCCT CCCTCCCACC CCAGGGCCAG ATGTTCAGCT GGCGGAGGCA 360
TCGGCTGGGG GAGGGGTGCT GAGGCCGCAG CCGGCACTAC TTCCCTGCCA 410