EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM010-09013

Organism

Mus musculus

Tissue/cell

Brain_E14.5

Coordinate

chr3:88561510-88563050

Target genes

Number: 23
Name	Ensembl ID

Cct3	ENSMUSG00000001416
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059
2810403A07Rik	ENSMUSG00000028060
Rit1	ENSMUSG00000028057
Syt11	ENSMUSG00000068923
Gon4l	ENSMUSG00000054199
Msto1	ENSMUSG00000068922
Dap3	ENSMUSG00000068921
Ash1l	ENSMUSG00000028053
Rusc1	ENSMUSG00000041263
Fdps	ENSMUSG00000059743
Hcn3	ENSMUSG00000028051
Clk2	ENSMUSG00000068917
Scamp3	ENSMUSG00000028049
Fam189b	ENSMUSG00000032657
Gba	ENSMUSG00000028048

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Esrra	MA0592.2	chr3:88562843-88562854	ATGACCTTGAA	-	6.62
Esrrg	MA0643.1	chr3:88562843-88562853	ATGACCTTGA	-	6.02
Nr5a2	MA0505.1	chr3:88562842-88562857	GATGACCTTGAACTC	-	8.03
Rarb	MA0857.1	chr3:88562541-88562557	TGTCCTTTTTACCTTT	-	6.18

Enhancer Sequence

CAACAACAAC AACAAAAAAT CAATTCCATA GTCCAGGCAT TGAGGCACAT ACCTTTAATC 60
CCAGCACTTT GCAGATAGAG GCCTGGTCTA CATAGCTGGA GATATCTAGA TCTACACAGT 120
GAGATCCTGT CTCAATAAAA TTTTCCCCTA GGGGCTGGTG TGCCTCACAC CTTTGTACAT 180
GTTGGACAAG CACTGTACCT ACTAAGCCAT ATTCTCAGCC TTCCTACACA GGAACCTTAG 240
AAGGAGGGTT TGGTTGCAGT TACAAGCTAT AAGAGGATGT CCTGGGCTGG GGATGTAGCT 300
CAGTGTGTGT TAGACCCAGA GTTAGATCCC CAGCTCATCC CCCAGGCCCC TCTTTAGAAA 360
AAACGATGCC TTTTAAAGAT GAGCTGGAGA GTGAAATGTC TGGAGTAGTT CTGGCTGAAG 420
CCCACACTTT GTCCTGAGGA GGATTTGGAG GCGGCATTTG GGCTCTTTGG CTGGGGATCC 480
TGGGGATGAA TAAAGGACAG ACTCCCGGGT GCTGCTCAGA GATAAGGGCT CAGGAAGTGT 540
GGGAGTCTGG CAAGCTCTGC TGTCCTGTTG GGGCCTCTCC TACTTCGATG TATTGCTCAG 600
GATCCTAGCC CTGGCTTCAT CCTCATGAAA GGAGTTAATA AAGTGGGAAG AAACTTGGCT 660
CTCCCCAAGA ACTCCTGGCA GTTTAGCAAA TGCCATTGTC TGTGCTCTCT GCCCAGTGCC 720
CTGGATTTGA GGCTGCTTTG TCTCCAGCCT GAATCAGTTC CTTTTTGGCC AGTCTTTTCC 780
CAGCTGCAGC TCTCGGCACA GAGCCACCCC TCCCCCACAG TACTGGACTG TGAGCACACG 840
AGTGGCCTGG AAGAGTGGTG GGTGCTGTTG GAAACAGCCC TCCTTCCAGG ACAGACAAGG 900
CTGAGCACTC GAGCCCTGTA AATGGAAGCC AGGAAACTGG AAAGCGAGGA GCAGAGACTG 960
AGGAAAAGTA GGCAGGAGAA GGCAGAGGAG GGGACTTTCC CTTCTGTCGT CTCCACTGTC 1020
CCTTCCTGTT ATGTCCTTTT TACCTTTTGA GCTAGGATGT CAAGTATTTT AGGCTGTTCT 1080
TGAACTTGTA GGGAAGGCTG ACTTTGAATC TCTGAATCTC TTGCTTCTAC CTCCTAAGTA 1140
CTGGGGTTGT AGGTACCACC CTCCACTTTC ATTTCATGTG GGACCAGGGA TCTGTCCTAA 1200
GGTTCTGTAC CTCATAGGCA AGCACTCTAC CAACTCAGCC ACATCCACAG CCCTTGTGTG 1260
AGTGTGTGTG CGTGTGTGTT TCTGAGACAG TTTCCTGCAG CCTCGGTTGA CATTCAGCTT 1320
CCGAGAGCTG AGGATGACCT TGAACTCCTA AGCCTCCTCA TCTCACCGAC CAAGAGCTGG 1380
GATTTCAAGC CTCTGCCATG ATGCCCAGTT CTCAAAGTCA GAATTGGCTA GTACAGGATT 1440
CCAGTACTCA GTCAGCAAAA GCAGGAGGAT TATTGTAAAC TCAAAGGCAG CCTAGGCAGA 1500
GTTGAGTCTC TAGCTGCATA TGTAGCAGAA GATGGCCTAG 1540