EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM003-00260

Organism

Mus musculus

Tissue/cell

416B

Coordinate

chr1:89545290-89545750

Target genes

Number: 10
Name	Ensembl ID

U6	ENSMUSG00000089613
3110079O15Rik	ENSMUSG00000026258
Gm6153	ENSMUSG00000090994
Ngef	ENSMUSG00000026259
Inpp5d	ENSMUSG00000026288
Atg16l1	ENSMUSG00000026289
SCARNA6	ENSMUSG00000087968
Sag	ENSMUSG00000056055
Dgkd	ENSMUSG00000070738
Usp40	ENSMUSG00000005501

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NFE2L1	MA0089.2	chr1:89545353-89545368	CGGTGACTCAGCAGC	+	6.03
Nfe2l2	MA0150.2	chr1:89545351-89545366	CCCGGTGACTCAGCA	+	6.38

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

mSE_00240	chr1:89516600-89556311	pro-B_Cells
mSE_06310	chr1:89544178-89546965	E14.5_Liver
mSE_09143	chr1:89545291-89547026	Lung
mSE_12014	chr1:89545604-89548174	Spleen

Enhancer Sequence

GTTTCTATGT CAAGTGCTTT ATTTTGACAT TTGCTTTAAA ATGGGGACTA CAACTCTTCT 60
TCCCGGTGAC TCAGCAGCCT CCGATAGTAA ACAGTCCCCC CTTTCCTGCC GACTCACGGT 120
TCCTCAGCCC ATATGCTAAC GTCCCACTTC CTCTCAGATG CTGGATGTAG ACTCCTCCTC 180
CTGTTCCACT TATTGATTAG TCTCTACTTG CAATAATGCA GCGATGCACA TTGGTAGCAG 240
TGACATTCTT ATGGCCTGTT TCGGATTTCT GCTCCAGAAG GAGACTATAA ATCAAGACCA 300
GGGCAGCAAA GGGGAAGAGG AAGTGGGTAA ATAAGATGGG GGTCAGCATA GGTCCTGTAT 360
GAAGGTTCCA GCCAGTCCAC TGGGGACTTC TTCTTAGGTA AAGCTGAATG CTAGGTGAGT 420
GGTCAGAACC AGACACCAGG AACTCTCAGG GGATAACCTG 460