EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM002-28042

Organism

Mus musculus

Tissue/cell

3T3-L1

Coordinate

chr4:132324700-132325950

Target genes

Number: 19
Name	Ensembl ID

Rab42	ENSMUSG00000089687
Snhg12	ENSMUSG00000086290
Snora73b	ENSMUSG00000065353
Snhg3	ENSMUSG00000085241
Phactr4	ENSMUSG00000066043
Med18	ENSMUSG00000066042
Sesn2	ENSMUSG00000028893
Atpif1	ENSMUSG00000054428
U6	ENSMUSG00000065623
Eya3	ENSMUSG00000028886
Xkr8	ENSMUSG00000037752
Rpa2	ENSMUSG00000028884
Ppp1r8	ENSMUSG00000028882
Stx12	ENSMUSG00000028879
Gm13033	ENSMUSG00000083816
Fam76a	ENSMUSG00000028878
Wasf2	ENSMUSG00000028868
Map3k6	ENSMUSG00000028862
Slc9a1	ENSMUSG00000028854

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr4:132325324-132325336	AAACAAACAAAC	-	6.32
Myog	MA0500.1	chr4:132325938-132325949	CTGCAGCTGTC	-	6.62
Nr5a2	MA0505.1	chr4:132325785-132325800	GCTGGCCTTGAACTC	-	8.25
Tcf12	MA0521.1	chr4:132325938-132325949	CTGCAGCTGTC	-	6.14

Enhancer Sequence

GGTACGTAGA CTGACGGCTC CGTTCTCATT TGTGTCCTGG CCAGGAGGGA ACGTGTTTTC 60
GTGCGGGAGG GTGGCACACC CCAAGGTGTC AGAAGCTGTC CGTTACCTAC CTTGTCTTTT 120
GTATGGTCAA GTGGGGAACA GGGTTTTTAT TATTTTATTG TTTGGCAAGC CTGCAGTGGT 180
TCGCCCGGCC TCCATTTTCC TGGCCCTACC ACTCGAAAGT ATGCTTTAGT AGAGTTTAAT 240
ATCGCTGTCC CCAGGGCACA AAAATCCCTG AAGAACAAGA GTCCACTGTG TTCAGAACAG 300
GTTTGGGGTT GTTTCCTGTT GGTAACTGAC AGGAAGGACA CGCTAAGCCT TAATCTGCTG 360
GGCTTTTTCT GCCTCGTACA TATTCATTGT ATGACCAAGT GTTTTGGAGG TGTTTGTAGC 420
TCTGGCTGGC CTGGAACTCA GAGATCCACC TGCCTGTACA CTGTAGTTGT CTTCAGACAC 480
ACCAGAAGAG GGCATCAGAT ACCACTACAG ATGGTTGTGA GCCACCGTAT GGTTGCTGGG 540
AATTGAACTC AGGACCTCTG GAAGAGCAGT CAGTGCTCTT AACCGCTGAG CCATCTCTCC 600
AGCCCAAAAA GATCCTTTCT TAAAAAACAA ACAAACTACA TTGCTCGTAG GTGGCTTGAG 660
AGGCAAGTGT CTTTGCTAGA TGCTCCTCTG CCCACTCCAT CTGACTCTCC TGTTAAGATG 720
CCCAAAGATG AGCAGCTTGA CGAAACTCAC CAGGTTTTCT GCAGAGACTG CCATCTGGTT 780
GCCAGAATAT CTCCTAAAAG AAGCTATACT TCTAACTTCT TCCATTTTAT CAAGAAACCT 840
AGAGCATCTT CGTAGTCCTT TTTCTGCTTG TCATTTCTCA AGCCTTTTCA CAAGGCCCTG 900
TTGTCTCCGT GGTGTCCTGA ACACTGCTCT TGCTATGTCT GGGATGTGCT CTTTCTACCC 960
CTACCTCTCT GAGACAGTTG TTTTCTTGTT GTTGTTTTGT TTTGGGTGTC TGTGTGTGTG 1020
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA TCCTTGGCTG TCCTGGAACT CACTCTATAG 1080
ACCAGGCTGG CCTTGAACTC AAGAAGTCCA CCTGCCTCTG CCTCCTGGGT GCTGAGATTA 1140
AAACCATTTG CCACCACTGC CTAGCCCTGG GATGCGTTCT TTTTTTTTTT TTTTTTTTTT 1200
TTTTTTTAAG ATTTATTTAT TTATTATATG TAAGTTCACT GCAGCTGTCT 1250