EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS197-00467

Organism

Homo sapiens

Tissue/cell

ZR75-30

Coordinate

chr1:28672000-28674000

Target genes

Number: 25
Name	Ensembl ID

RPA2	ENSG00000117748
XKR8	ENSG00000158156
AL512288.1	ENSG00000240750
EYA3	ENSG00000158161
RP5	ENSG00000228589
PTAFR	ENSG00000169403
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
TAF12	ENSG00000120656
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
EPB41	ENSG00000159023
RP4	ENSG00000225616
Y	ENSG00000206704

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HES2	MA0616.2	chr1:28673805-28673815	GGCACGTGCC	+	6.02
HES2	MA0616.2	chr1:28673805-28673815	GGCACGTGCC	-	6.02
IRF9	MA0653.1	chr1:28673334-28673349	AGTTTCGCTTTTGTT	-	6.52
Nr2f6(var.2)	MA0728.1	chr1:28673722-28673737	AAGGTCAGGAGTTCA	+	6.04
RREB1	MA0073.1	chr1:28673088-28673108	ATTTTTGGGGTGGGTTGGGG	-	6.38

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028345

chr1

28672089

28673562

Enhancer Sequence

TAGTACATGT ACATAGATAT AATGGTATGA AAGTAAATAT TTCAAAACGT TAATAAGTGG 60
CTCACACCTG TAATCCCAGC ACTTTGGAAG GCCAAGGCAG ATGGATCATT TGAGGTCAGG 120
AGTTTGAGAC CAGCCTGAGC AACGTAGCAA GACCCTGTCT CTACAAAAAA ATACAAAAAT 180
TAGGGGGGCA TGGTGGTACA CACCTGTAAT CCCAGCTACT CGGGAGGCTG AGGTGGGAGA 240
ATCACCTGGG CTCAGTAGGT TGAGGTTGCA GTGAGCCAAG ATGTCGCCAC TGCACTCTAG 300
CATGGGTAAC AGAGTGAGAC TCCATTTCAA ACAATAACAA CAACAACACA CACAAAGAAA 360
ACATAAAACA GAGAAAGAGT GTTGCTTTAG TAGGGGAGTA AGGATGTCTG GGATTTTCCA 420
CCTTGCCTGT GCCATGCTTG TTAGCCCCTG TGGCCAGTAT ATGAGTGTGA AGGAGGAGTC 480
AGCCTTCTCC ATCTCCTTTG AAAAGTGATC TCCTCTTTTT TCAAATGAGA AAGGATCCCC 540
AGGATGCTTT TAGGCAATGA CAGTTTCTTT TTTTTTTTTT TTGAGACGGA GTCTTGCACT 600
GTCACCCAGG CTGGAGTGCA GTGGTGCGAT CTCGGCTCAC TGCAACCTCT GCCTCCCAGG 660
TTCAAGCGAT TCTCCTGCCT CAGCCTCCCA AGTAGCTGGG ATTACATGCG CCAGCCACCA 720
TGGCCAGCTA ATTTTTTGTA TTTTTAGTAG AGATGGGGTT TCCCTATGTT GGCCAGGCTG 780
GTCTCGAACT CCTGACCTCA GGAGTTCCCA GCCAACAGTT TCTTGACAGA TCAAATATGG 840
GGCCCAAGGA TAAAGAACCA ACATTTAACT CTAGAGGCAG AGACAGGATG TGAGTCATCA 900
CACTGGCCTT TCGTCAAGTT GACTATAATT GTTTCTGTGT TTGTCCTCCG TGGTATGAAT 960
ATGAACTGAC AAGACTAATT TAGAAAAACA AACAAATATA TCAGAAGATA AACATTTAAA 1020
TAAGTAGTTT CCTTCAAAGT ATTTATTTTG ATAAATGAAC ACTTTAGCAT TGTTCAAGTA 1080
ATCATTGGAT TTTTGGGGTG GGTTGGGGAG ATGTCAAACA AATTGATTTC AAAATAGGTT 1140
TACGGTACTA TTTTAGGTAT GGTATTTCTT GAAGAAAAAA AGTATACCCA TTACTCTTGC 1200
TAGGTTGGCC AGGCTGATCT TGAACCCTGG CCTCAAGTGA TCCTCCCACC TCAGCCTTCC 1260
AAAATGCTAG GATTATAGGC ATAAGCCACC ATGCCTGGCC CTAAAATGGG GTTTTTTTTT 1320
GTTTTTTTAG ATGCAGTTTC GCTTTTGTTG CCCAGGCTGA AGGGCAGTGG CGTGATCTCG 1380
GCTCCCTGCA ATCTCCACGT CCCGGGTTCA AGTAATTCTC TTGCCTCAGC CTCCTGAGTA 1440
GCTTGGATTA CAGGTGCCTG CCACCACGCC CAGCTAATTT TTCTGTATTT TTAGTAGAGA 1500
CCAGGTTTCA CCACGTTGGC GAGGCTGGTC TTCAACTCCT ACCTCAGGTG ATCCGCCCGC 1560
TTCGGCCTCC CAAAAAGTGC TGGGATTACA GGCCTGAGCC ACCACGCCCA GCCACTTATA 1620
TTTCTTAGTA ATAAAAATCT TGAAACAGAG AAGCATTTGG CCGGGCGCGG TGGCTCACAC 1680
CTGTAATCCC AGCACTTTGG GAGGCCAAGG TGGGTGGATC ACAAGGTCAG GAGTTCAAGA 1740
CCAGCCTGGC CAAGATGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAA TTAGCTGGGC 1800
ATGGTGGCAC GTGCCTGTAA TCCCAGCTAC TCAGGAGGCT GAGGCAGAGA ATTGCTTAAA 1860
CCTGGGGAGC AGAAGTTGCA GTGAGCCGAG ATCATGCCAC TGCACTCCAG CCTGGGCGAC 1920
AGAGTGAGAC TCCGTCTCAA AAAAAACAAA AACAAAAAAA AAGAGAGAGA AGCAGTTAAA 1980
TAAATTTTGG CAAACCCATT 2000