| Tag | Content |
|---|
EnhancerAtlas ID | HS195-02640 |
Organism | Homo sapiens |
Tissue/cell | VCaP |
Coordinate | chr17:3879630-3880590 |
Target genes | |
SNPs | | Number: 2 | ID | Chromosome | Position | Genome Version |
|
TF binding sites/motifs | | TF | JASPAR ID | Coordinate | Motif Sequence | Strand | -Log10(p-value) |
| RARA(var.2) | MA0730.1 | chr17:3880386-3880403 | TGACCTTGGCATGCCCT | - | 6.81 | | RFX1 | MA0509.2 | chr17:3879984-3880000 | GGTTTCCATAACAACC | - | 6.02 | | RFX1 | MA0509.2 | chr17:3879984-3880000 | GGTTTCCATAACAACC | + | 6.03 | | RFX2 | MA0600.2 | chr17:3879984-3880000 | GGTTTCCATAACAACC | - | 6.17 | | RFX2 | MA0600.2 | chr17:3879984-3880000 | GGTTTCCATAACAACC | + | 6.22 |
|
| | Number of super-enhancer constituents: 6 | ID | Coordinate | Tissue/cell |
| SE_23296 | chr17:3879161-3882957 | Colon_Crypt_1 | | SE_23883 | chr17:3879176-3881572 | Colon_Crypt_2 | | SE_24983 | chr17:3879150-3881536 | Colon_Crypt_3 | | SE_32031 | chr17:3879134-3883010 | Gastric | | SE_50419 | chr17:3879120-3882989 | Sigmoid_Colon | | SE_60262 | chr17:3862322-3890678 | Ly4 |
|
| | Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder | | Number of disease enhancers: 1 | Chromosome | Start | End |
|
| | Number: 1 | ID | Chromosome | Start | End |
| GH17I003976 | chr17 | 3879635 | 3882730 |
|
Enhancer Sequence | GTCGTCAGGC CCTGAACCTG GAGGGCCAGC CTGACTCCTG TGTGCAGGGG CTGGGGGGTG 60
GGGCTGCGGC TTCACCTCAG GGGGTGCTCC CAGGCCTGGG GCTGGGTTAG GGTGGCTGGG 120
CAAGTCCTCA CGCTGGGCTG GGTTCTCCCG GGTACCACCC TAGCTGTGGG AGTCTGGGAA 180
CACCCCTTCC CCTCTGAACG CAGGGTCGCT GTGAAGTGGG GGTGGGACAG CGTCTGGAGG 240
TTGCAGGGTC CCCGGCCGCG AGGATAAAGC GGCAGGAGAC CGGGGCCCTG GCCTTGGCTC 300
TCAGGCTCTA TTTGTAGGTG CACAGCGTTC CCTGCCCCCA CTGCCTGTAG TCCTGGTTTC 360
CATAACAACC CTGGACTGTT CTTGACCCCT GAGGCTCAGC TGTTCTGACT TTCCCTCCTG 420
GATGCCCTTC TGGGTCTTCT CGTTCGGCAG TGCCAGGTCT CCGCCCTGGT GTTCCCTGCG 480
TGGGCAGCCA GCCCAGCTCC CTGGGGATAT CCTGTCACTG TGGCCCAGAG CCTAGGCCCG 540
GCGTCTGCCA GGTCAGGCCT AAGCGCTCTG GGTTCTTTCC AGGTCCTCAG ATGGGGCCCG 600
GGAACCCAGA GAGGTGGAGG AAGTTGGCAG CGGCACCCAG ATCCCCAGCG TGGCAGGGCT 660
GGGCACTATG TCCAAACCAC CTGACGCCTG GGCTGCAGCC AACCTCTGCG GCAGACGCAC 720
AGGTGGGGCT CTCGGATCCA TAGCTGGGCC TGTGGGTGAC CTTGGCATGC CCTCTATCTC 780
TCTACGCTGA CTCCCTGAAG CCATAACTTA CGGCACACCC AGCGCAGGCC CAGTGGACCC 840
AGGGGATCTG CAGGGCAGGT GAGCGTGGTC ATTCCCAGAG TGGCTATTGG GTGCTGGGAG 900
TTGCTGGGCC TCGAGCTGCT GTCTGGACAC AGTGGGGGCT CAGGGTGGGA GGGAGCTTCA 960
|
