EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS184-05756

Organism

Homo sapiens

Tissue/cell

T47D

Coordinate

chr11:65410640-65411660

Target genes

Number: 26
Name	Ensembl ID

NEAT1	ENSG00000245532
AP000769.1	ENSG00000173727
MALAT1	ENSG00000251562
SCYL1	ENSG00000142186
LTBP3	ENSG00000168056
RP11	ENSG00000260233
SSSCA1	ENSG00000173465
FAM89B	ENSG00000176973
EHBP1L1	ENSG00000173442
KCNK7	ENSG00000173338
MAP3K11	ENSG00000173327
PCNXL3	ENSG00000197136
SIPA1	ENSG00000213445
RELA	ENSG00000173039
RNASEH2C	ENSG00000172922
KRT8P26	ENSG00000214659
SNX32	ENSG00000172803
MUS81	ENSG00000172732
CFL1	ENSG00000172757
EFEMP2	ENSG00000172638
CTSW	ENSG00000172543
FIBP	ENSG00000172500
CCDC85B	ENSG00000175602
C11orf68	ENSG00000175573
DRAP1	ENSG00000175550
SF3B2	ENSG00000087365

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

TCF3	MA0522.2	chr11:65411182-65411192	AGCAGGTGTT	-	6.02
ZNF263	MA0528.1	chr11:65411579-65411600	TAAGGAGGAGGAGCAGGGTGG	+	6.29
ZNF263	MA0528.1	chr11:65411585-65411606	GGAGGAGCAGGGTGGGGGAGT	+	6.36
ZNF263	MA0528.1	chr11:65411582-65411603	GGAGGAGGAGCAGGGTGGGGG	+	7.65

dbSUPER

Number of super-enhancer constituents: 7
ID	Coordinate	Tissue/cell

SE_11081	chr11:65404038-65413619	CD20
SE_17387	chr11:65403886-65412415	CD4p_CD25-_CD45RAp_Naive
SE_20038	chr11:65410588-65411561	CD56
SE_22445	chr11:65410553-65411712	CD8_primiary
SE_27234	chr11:65411229-65411918	Esophagus
SE_34528	chr11:65410496-65412047	HCT-116
SE_60233	chr11:65403890-65423159	Ly4

Enhancer Sequence

CTCCCAAAGT GCTGGGATTA CAGGCATGAG CCACTGCCCT TGGCCCAGAG TCTGCATTTT 60
AAAAAGATAT TTGCAGCCCT AGATGCCCTG GTCTGACTCA CCCCACTGGT CCTGCAGTTC 120
CCGCATCATT CCTGGCCAAT TTCCCCCACA GCCCCTGCTG GGTTTCCTCT AACATGTGGT 180
GCTCACAGCT TCCTGGAGCG GCTCCTTCCA TCCCCCACTC CATGCTGAAA GCTGCCCATT 240
GGCTGAGTCT TCTCCTCTGT ATCATTCAAC CCATCAGTCA TTCAACAAAC ATTTCTTAGA 300
CCTTTTTGGT GCCAGGCCTC AGACTGGATG CTGGGGACAG GTCTAGACCA GGTGCTTTGC 360
TTGAGTAGCT CACAGCTGGG TGGGAGAAAG AGACCCACAG AGAACTGCTG AAACACAGGA 420
GCAGTACTGG AACACTGAAA GGGAATGTTG AGGGCTGCCT GGGCCACGAC GGTAGTGATG 480
AGAGCCCTTC CTTGGCCAGG GTTTTCCAGC ATGGAGAACA CAAAAGGGCT CAGGCCCGGA 540
TAAGCAGGTG TTTTCTGGTC AGAAGGAATA ACTTGTGCAA AGGCTTGGAG AATGAGAGCA 600
TGGCACATTA GGCAGTCAGT TCAGCGTGGC TGGGGTTGGG ATTGTGGGGA GGGGCGGGGG 660
AGAAGCTTGC ATTTGTTCCC GTGGACACTG GGGAGCCATG GAGGGATACG GTGCAGATCT 720
GAGAGGGGCA GCTCTCTGGC TGCAGCATGG GGACTAGACT GTACGGGGCG GGGATGCCAG 780
GCTGAAGGCT ATTGCAGTTG CCCAGGCTAG ACACAGTGGC AGCGATAGTG GAGGTGAAGA 840
GGAGGTGACA GTCCAGGAAG GACTGGGTAG TCATGTGGCT GACTGGAAGG GGTGAAGTGC 900
TAGGATTTCC CAGCTTCTTG GCCCCCAGGA GTGGTGGTTT AAGGAGGAGG AGCAGGGTGG 960
GGGAGTCACA GCAAGGTGAG ACATTAGGCA GCCGGAGAAA AAGGCCCGGG GTTTGGTAGG 1020