EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS178-00564

Organism

Homo sapiens

Tissue/cell

Skeletal_muscle

Coordinate

chr1:24420720-24421340

Target genes

Number: 18
Name	Ensembl ID

ID3	ENSG00000117318
RPL11	ENSG00000142676
AL031295.1	ENSG00000244609
TCEB3	ENSG00000011007
RP5	ENSG00000236810
PITHD1	ENSG00000057757
LYPLA2	ENSG00000011009
GALE	ENSG00000117308
HMGCL	ENSG00000117305
FUCA1	ENSG00000179163
RP11	ENSG00000229106
CNR2	ENSG00000188822
PNRC2	ENSG00000189266
SRSF10	ENSG00000188529
MYOM3	ENSG00000142661
IL22RA1	ENSG00000142677
IL28RA	ENSG00000185436
NIPAL3	ENSG00000001461

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Nr2f6(var.2)	MA0728.1	chr1:24420875-24420890	TGAACTCTTGACCTC	-	7.64
RARA	MA0729.1	chr1:24420872-24420890	ACCTGAACTCTTGACCTC	-	6.73

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_30016	chr1:24420832-24427246	Fetal_Muscle
SE_40929	chr1:24420849-24426496	Left_Ventricle
SE_49006	chr1:24421207-24426466	Right_Atrium
SE_51642	chr1:24420908-24427215	Skeletal_Muscle

Enhancer Sequence

GTGCCATCTC GGCTCACTGC GACCTCTGCC TCCTGGGTTC AAGCGATTCT CCTGCCTCAG 60
CCTCCCGAGT AGCTAGATTA CAGGCACCCA CCAACATGCC TGGCTAATTT TTGGTATTTT 120
TAGTAAAGAT GGGGTTTTGC CATGTTGGCT AGACCTGAAC TCTTGACCTC AGGTGATCCA 180
CCCACCTCAG CCTCCCAGAG TGCTAGGATT ACAGGTGTGA GCCACCACGC CTGGCCTCCC 240
TCCCTCACTC TTAGGGAGGT AATGATGCAT GCAAATGGCT GAGCAGGTGC CTGGTCAGTG 300
CCAGCGGCTA CAATTGTGCT GATGGCTTCC TCCCTCCTCC CAGGTGGACA CAGCCCCCTG 360
GGCTCATGCA CATCTGCCCC TACCATTTAC CCCAGCCCTA ACCCAGGGCC TGGCACCCCA 420
CAGATGCTTG GTGGCCATTT ATGGGGTGGC ATGATCTGAC CACACCTGGC TGCACTCCCG 480
CTCTCCTCTG CCTCTTCAGC ACTTTAGCAC AGTTGGTACT GGTTGGGGAG AGTCTCTGTC 540
CGCTAGGGGT CCTCTCTGGC TCTGAGTTGA GCTTTGGAGG GGCCAGCTCT GGAGGCTGGG 600
GGCCAGGACT GGGGGTCCTT 620