| Tag | Content |
|---|
EnhancerAtlas ID | HS177-19451 |
Organism | Homo sapiens |
Tissue/cell | SK-N-SH_RA |
Coordinate | chr6:52254170-52255620 |
TF binding sites/motifs | | TF | JASPAR ID | Coordinate | Motif Sequence | Strand | -Log10(p-value) |
| HNF1A | MA0046.2 | chr6:52254495-52254510 | AGTTAATGTTTAATT | - | 6.56 | | JUN(var.2) | MA0489.1 | chr6:52255377-52255391 | AGGAAGTGACTCAC | + | 6.15 | | Lhx3 | MA0135.1 | chr6:52255573-52255586 | TAATAATTAATTT | - | 6.25 |
|
| | Number of super-enhancer constituents: 12 | ID | Coordinate | Tissue/cell |
| SE_03340 | chr6:52253085-52255876 | Brain_Angular_Gyrus | | SE_04214 | chr6:52253002-52256108 | Brain_Anterior_Caudate | | SE_04963 | chr6:52250679-52259985 | Brain_Cingulate_Gyrus | | SE_06207 | chr6:52251162-52257636 | Brain_Hippocampus_Middle | | SE_06960 | chr6:52252878-52258020 | Brain_Hippocampus_Middle_150 | | SE_08050 | chr6:52250972-52259364 | Brain_Inferior_Temporal_Lobe | | SE_12385 | chr6:52253060-52257034 | CD3 | | SE_16054 | chr6:52253695-52256439 | CD4_Naive_Primary_7pool | | SE_17578 | chr6:52252868-52267051 | CD4p_CD25-_CD45RAp_Naive | | SE_19089 | chr6:52252884-52266905 | CD4p_CD25-_Il17-_PMAstim_Th | | SE_21851 | chr6:52253151-52257043 | CD8_Naive_7pool | | SE_58572 | chr6:52147442-52265048 | Ly1 |
|
| | Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder | | Number of disease enhancers: 1 | Chromosome | Start | End |
|
| | Number: 1 | ID | Chromosome | Start | End |
| GH06I052388 | chr6 | 52253119 | 52256859 |
|
Enhancer Sequence | CATAGGTAAG CCAGTGTTCC TGTCTCCAGA GGCTTGCAAT TCAATAAGCA GAAGAGAGAA 60
GGCTCTCTAC ACACACAGTA GTGAAGTAAT GGGCAAGCCT GATGTTCTCC TTACCAAAAT 120
ATGTGGAATA GATAGATAAG GGTTGGGGGC GGGGGAGGAA TCAAGATGGC CTGGAGAAGG 180
CTTTGTGGTG ATTTGGAATT GAACTAAGGC CTTGGAGATA TCTAAGGAGA AATGAAGAAT 240
AAAGTGACTT GCTTGACTCT TTATAGCAAA TAAAATTGCT GGGTCTTAGA ACCACCAGGA 300
GAGTGTACTG TTGTCACTGC AGAAGAGTTA ATGTTTAATT GCTAGGGAAC ACAGCTTTCT 360
TTATATGGTG CTCCAAACTC TAGCTCGATT TGTTATCTGA TTTTCTGCTG TGGAAAGGGC 420
ATTTCCAAGA TTGATTTCCT GCCAGTGGAA ATGAGCAGCT CTCTTCACGT TCACCCGGGT 480
TGGCCCGGGT CCCAGCTGGT TTGCAGATCA GTGATGAAGC TTCCTGCCGG TGAGAAGCTA 540
GATCTAGTTG AGAGGTTGCC TGACTGAAGC CAAACCACAC CTAACGAAGC CGATAGTTAC 600
ACTCATGTAG AAAGTCCAGG GAGACACCTG TCCCTAGGCT TTAATTAGTG GGAGTTTCAG 660
ACAGCAAAGT TTACCTTTAC TCAAACAAGA AGCCTCAGAA GAACATGATC TTCACACCTG 720
AACTGTTGAT TGCCTGGAGA CTGCTCAGTG TGTTCTCCCA GTAAATTGTT CCCAGCTCCT 780
CTGACTTCTC CCACTCGACA GATTAAACAC AGATACTATT TATTCCATGT GGCAGATGCA 840
TTCTCTGTCT GTAATGATGC ATTTTGAAAC CAGTACTTTC TCAAGTGAGA TTAGCTGAGA 900
TGTGGAAAGT ATAGGAAGTG ACAGAACAGA CAGAAATTCT AGCTAGAGGG TTCTAGTTAG 960
ATAAAGAGAA AAAGGCACTC AGAGGAAATT TGCTCTGCTC ATCTTTCCCA GGGCACAGCA 1020
ACAAATTAAG GCTGTCTTTT CTTTCTCCTC TTAGGAATAT TATAGGGCAC CACAGAGGAA 1080
AAGATTCATA AGTGGAGAGC TCACTGAGCC CAGAAGGACA CATCTTGCTG CCAGATCTGT 1140
GGCAAAAAGG TGTACCTTAC TTTTTTTTTA TAGGCACGGT TCAGCCGTAC CACAAACCCA 1200
CATGGTCAGG AAGTGACTCA CGTATTAATG CCGTTTGAGT TTGTGTGCTG TGGGGAAGGT 1260
CTTTTGACAA TATTGTGTAT ACTGGCTTTT CCAATCTAAG AGAACATCTT TGCTGCATTA 1320
ACAGTAGATG TTACATATTT TTTTCCCTTT AAACCCCCCA TGACCAATAG CTTACCCTAT 1380
GGCAAGTATA GTTAGGTTAC TCGTAATAAT TAATTTGGTA TGCTAACTAG TTGAGCTCAC 1440
AGAAAAATGC 1450
|
