EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS177-05314

Organism

Homo sapiens

Tissue/cell

SK-N-SH_RA

Coordinate

chr12:54552920-54553310

Target genes

Number: 19
Name	Ensembl ID

HOXC5	ENSG00000172789
HOXC6	ENSG00000197757
HOXC9	ENSG00000180806
HOXC	ENSG00000250451
HOXC8	ENSG00000037965
HOXC4	ENSG00000198353
AC012531.25	ENSG00000260597
MIR615	ENSG00000207571
RP11	ENSG00000249388
Y	ENSG00000202146
SMUG1	ENSG00000123415
AC078778.1	ENSG00000241785
CBX5	ENSG00000094916
HNRNPA1	ENSG00000135486
NFE2	ENSG00000123405
COPZ1	ENSG00000111481
ZNF385A	ENSG00000161642
ITGA5	ENSG00000161638
GTSF1	ENSG00000170627

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

USF1	MA0093.2	chr12:54553113-54553124	GGTCACGTGGC	-	6.62
USF2	MA0526.2	chr12:54553110-54553126	GAGGGTCACGTGGCTC	+	6.78

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH12I054159

chr12

54553041

54553190

Enhancer Sequence

AGTTCAGGTT GTCAGCCCCA GCCCCAGCCC CAGCCCCAGC GGAGGAGAGG GGTCTCATAA 60
CAGCCCGGCG TCGAGCCCCC AGCCCTCAGC CCTCACTGAA GAAGGAGGTA ATTAGGAGCT 120
GTGCAGTCCG TCCCCCAACA GGTAGAGCTG AGCAGCTGCA TCCATCATCC AAGCAGCTGC 180
CACAGAGCGG GAGGGTCACG TGGCTCGGCC GGACCAACAG GAGAGTGTGG GGAGGCCTCG 240
GGCTGGGGAT TGGCTGGTCT GCAGCAGGAG AGTCAGGGCT GTCGGGGACA ACCTGAGAAT 300
GACCTTGTGG GGACTTCAGC ACCCCTGGCG CTTCTCCTCC CCAGAAATCT CTCCACCTGC 360
CCCCAGTTCC CAACTGAGGT CCTACCTGCC 390